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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275264 (79 seq.)
>W1710787532
LJJR01000013
Deinococcota
Thermus scotoductus [LJJR]
13666
13590
-
Pro
GGG
[ENA]
¡û
>C171047217
CP016312
Deinococcota
Thermus brockianus GE-1 [CP016312]
1670157
1670081
-
Pro
GGG
-
¡û
>W131160732
AQWU01000067
Deinococcota
Thermus igniterrae ATCC 700962 [AQWU]
73104
73180
+
Pro
GGG
[ENA]
¡û
>W131167512
ARDI01000003
Deinococcota
Thermus oshimai DSM 12092 [ARDI]
110441
110365
-
Pro
GGG
[ENA]
¡û
>W131177918
ARLD01000087
Deinococcota
Thermus scotoductus DSM 8553 [ARLD]
69131
69207
+
Pro
GGG
[ENA]
¡û
>W131218093
ATXJ01000004
Deinococcota
Thermus islandicus DSM 21543 [ATXJ]
199549
199625
+
Pro
GGG
[ENA]
¡û
>W131231971
AUIW01000018
Deinococcota
Thermus antranikianii DSM 12462 [AUIW]
6951
6875
-
Pro
GGG
[ENA]
¡û
>WENV180014083
FPIC01047599
[FPIC] soil metagenome; Soil
11
87
+
Pro
GGG
[ENA]
¢þ
>WENV180015285
FQKF010498630
[FQKF] soil metagenome; Soil
80
4
-
Pro
GGG
[ENA]
¢þ
>W141080531
ATNI01000119
Deinococcota
Thermus sp. NMX2.A1 [ATNI]
4771
4847
+
Pro
GGG
[ENA]
¡û
>WENV181285572
OFGS01002525
[OFGS] hot springs metagenome; Water and soil
138
62
-
Pro
GGG
[ENA]
¢þ
>WENV181404690
OGCB01000056
[OGCB] hot springs metagenome; Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
33854
33930
+
Pro
GGG
[ENA]
¢þ
>WENV181405551
OGCE01000339
[OGCE] hot springs metagenome; Octopus Spring, Yellowstone National Park, Wyoming, USA
6608
6532
-
Pro
GGG
[ENA]
¢þ
>WENV181407973
OGCH01000301
[OGCH] hot springs metagenome; hot springs
10776
10700
-
Pro
GGG
[ENA]
¢þ
>W08011569
ABVK01000001
Deinococcota
Thermus aquaticus Y51MC23 [ABVK]
33180
33107
-
Pro
GGG
[ENA]
¡û
>C191159658
CP038452
Deinococcota
Thermus caldilimi YIM 78456 [CP038452]
1260408
1260484
+
Pro
GGG
-
¡û
>W141818239
JQLJ01000001
Deinococcota
Thermus scotoductus KI2 [JQLJ]
1267877
1267953
+
Pro
GGG
[ENA]
¡û
>W141818303
JQLK01000001
Deinococcota
Thermus tengchongensis YIM 77401 [JQLK]
976786
976710
-
Pro
GGG
[ENA]
¡û
>W141820356
JQMV01000003
Deinococcota
Thermus amyloliquefaciens YIM 77409 [JQMV]
1579244
1579320
+
Pro
GGG
[ENA]
¡û
>W141820777
JQNC01000003
Deinococcota
Thermus caliditerrae [JQNC]
103242
103166
-
Pro
GGG
[ENA]
¡û
>W1911578778
PELL01000011
Deinococcota
Thermus scotoductus 39_S39 [PELL]
27191
27115
-
Pro
GGG
[ENA]
¡û
>W1911578854
PELM01000399
Deinococcota
Thermus scotoductus 38_S38 [PELM]
3938
4014
+
Pro
GGG
[ENA]
¡û
>W1911578894
PELN01000177
Deinococcota
Thermus scotoductus 37_S37 [PELN]
4376
4452
+
Pro
GGG
[ENA]
¡û
>W1911578955
PELO01000292
Deinococcota
Thermus scotoductus 35_S35 [PELO]
8289
8213
-
Pro
GGG
[ENA]
¡û
>W1911579007
PELP01000547
Deinococcota
Thermus scotoductus 34_S34 [PELP]
9911
9835
-
Pro
GGG
[ENA]
¡û
>W1911579041
PELQ01000134
Deinococcota
Thermus scotoductus 33_S33 [PELQ]
1093
1017
-
Pro
GGG
[ENA]
¡û
>W1911579052
PELQ01000338
Deinococcota
Thermus scotoductus 33_S33 [PELQ]
8283
8207
-
Pro
GGG
[ENA]
¡û
>W1911579111
PELR01000396
Deinococcota
Thermus scotoductus 32_S32 [PELR]
16352
16276
-
Pro
GGG
[ENA]
¡û
>W1911579129
PELS01000199
Deinococcota
Thermus scotoductus 31_S31 [PELS]
13323
13247
-
Pro
GGG
[ENA]
¡û
>W1911579189
PELT01000210
Deinococcota
Thermus scotoductus 30_S30 [PELT]
11632
11556
-
Pro
GGG
[ENA]
¡û
>W1911579230
PELU01000155
Deinococcota
Thermus scotoductus 29_S29 [PELU]
14394
14318
-
Pro
GGG
[ENA]
¡û
>W1911579258
PELV01000006
Deinococcota
Thermus scotoductus 28_S28 [PELV]
708
784
+
Pro
GGG
[ENA]
¡û
>W1911579336
PELW01000330
Deinococcota
Thermus scotoductus 27_S27 [PELW]
4388
4464
+
Pro
GGG
[ENA]
¡û
>W1911579381
PELX01000285
Deinococcota
Thermus scotoductus 26_S26 [PELX]
16462
16386
-
Pro
GGG
[ENA]
¡û
>W1911579384
PELX01000300
Deinococcota
Thermus scotoductus 26_S26 [PELX]
8375
8299
-
Pro
GGG
[ENA]
¡û
>W1911579424
PELY01000077
Deinococcota
Thermus scotoductus 25_S25 [PELY]
9525
9449
-
Pro
GGG
[ENA]
¡û
>W1911579483
PELZ01000445
Deinococcota
Thermus scotoductus 24_S24 [PELZ]
9685
9609
-
Pro
GGG
[ENA]
¡û
>W1911579512
PEMA01000281
Deinococcota
Thermus scotoductus 23_S23 [PEMA]
1276
1352
+
Pro
GGG
[ENA]
¡û
>W1911579557
PEMB01000133
Deinococcota
Thermus scotoductus 22_S22 [PEMB]
18051
17975
-
Pro
GGG
[ENA]
¡û
>W1911579574
PEMB01000328
Deinococcota
Thermus scotoductus 22_S22 [PEMB]
6255
6179
-
Pro
GGG
[ENA]
¡û
>W1911579625
PEMC01000310
Deinococcota
Thermus scotoductus 21_S21 [PEMC]
6219
6143
-
Pro
GGG
[ENA]
¡û
>W1911579667
PEMD01000279
Deinococcota
Thermus scotoductus 20_S20 [PEMD]
8290
8214
-
Pro
GGG
[ENA]
¡û
>W1911579723
PEME01000322
Deinococcota
Thermus scotoductus 19_S19 [PEME]
8290
8214
-
Pro
GGG
[ENA]
¡û
>W1911579761
PEMF01000330
Deinococcota
Thermus scotoductus 18_S18 [PEMF]
4394
4470
+
Pro
GGG
[ENA]
¡û
>W1911579811
PEMG01000409
Deinococcota
Thermus scotoductus 17_S17 [PEMG]
4569
4645
+
Pro
GGG
[ENA]
¡û
>W1911579866
PEMH01000375
Deinococcota
Thermus scotoductus 16_S16 [PEMH]
26139
26063
-
Pro
GGG
[ENA]
¡û
>W1911579886
PEMI01000110
Deinococcota
Thermus scotoductus 15_S15 [PEMI]
16650
16574
-
Pro
GGG
[ENA]
¡û
>W1911579965
PEMJ01000355
Deinococcota
Thermus scotoductus 14_S14 [PEMJ]
273
349
+
Pro
GGG
[ENA]
¡û
>W1911579992
PEMK01000275
Deinococcota
Thermus scotoductus 13_S13 [PEMK]
8283
8207
-
Pro
GGG
[ENA]
¡û
>W1911580023
PEML01000056
Deinococcota
Thermus scotoductus 12_S12 [PEML]
3629
3553
-
Pro
GGG
[ENA]
¡û
>W1911580041
PEML01000270
Deinococcota
Thermus scotoductus 12_S12 [PEML]
5074
5150
+
Pro
GGG
[ENA]
¡û
>W1911580075
PEMM01000050
Deinococcota
Thermus scotoductus 11_S11 [PEMM]
3699
3623
-
Pro
GGG
[ENA]
¡û
>W1911580100
PEMM01000265
Deinococcota
Thermus scotoductus 11_S11 [PEMM]
4861
4937
+
Pro
GGG
[ENA]
¡û
>W1911580132
PEMN01000110
Deinococcota
Thermus scotoductus 10_S10 [PEMN]
8404
8328
-
Pro
GGG
[ENA]
¡û
>W1911580182
PEMO01000166
Deinococcota
Thermus scotoductus 9_S9 [PEMO]
4389
4465
+
Pro
GGG
[ENA]
¡û
>W1911580252
PEMP01000417
Deinococcota
Thermus scotoductus 8_S8 [PEMP]
12832
12908
+
Pro
GGG
[ENA]
¡û
>W1911580279
PEMQ01000244
Deinococcota
Thermus scotoductus 7_S7 [PEMQ]
1708
1784
+
Pro
GGG
[ENA]
¡û
>W1911580290
PEMQ01000271
Deinococcota
Thermus scotoductus 7_S7 [PEMQ]
8290
8214
-
Pro
GGG
[ENA]
¡û
>W1911580345
PEMR01000257
Deinococcota
Thermus scotoductus 6_S6 [PEMR]
8283
8207
-
Pro
GGG
[ENA]
¡û
>W1911580389
PEMS01000391
Deinococcota
Thermus scotoductus 5_S5 [PEMS]
3969
4045
+
Pro
GGG
[ENA]
¡û
>W1911580437
PEMT01000304
Deinococcota
Thermus scotoductus 4_S4 [PEMT]
6280
6204
-
Pro
GGG
[ENA]
¡û
>W1911580477
PEMU01000263
Deinococcota
Thermus scotoductus 3_S3 [PEMU]
7133
7209
+
Pro
GGG
[ENA]
¡û
>W1911580524
PEMV01000291
Deinococcota
Thermus scotoductus 2_S2 [PEMV]
8274
8198
-
Pro
GGG
[ENA]
¡û
>W1911580586
PEMW01000463
Deinococcota
Thermus scotoductus 1_S1 [PEMW]
3949
4025
+
Pro
GGG
[ENA]
¡û
>W1810268442
PRDA01000019
Deinococcota
Thermus tenuipuniceus YIM 76954 [PRDA]
29630
29706
+
Pro
GGG
[ENA]
¡û
>W1810605079
QGMX01000002
Deinococcota
Thermus caldifontis YIM 73026 [QGMX]
78202
78278
+
Pro
GGG
[ENA]
¡û
>W1810889166
QURO01000004
Deinococcota
Thermus sediminis L198 [QURO]
1699832
1699756
-
Pro
GGG
[ENA]
¡û
>W1511312784
JPSL02000039
Deinococcota
Thermus filiformis ATCC 43280 [JPSL]
75528
75604
+
Pro
GGG
[ENA]
¡û
>W1511401686
JTJB01000009
Deinococcota
Thermus sp. 2.9 [JTJB]
7167
7091
-
Pro
GGG
[ENA]
¡û
>C11123054
CP001962
Deinococcota
Thermus scotoductus SA-01 [CP001962]
1890634
1890710
+
Pro
GGG
[Ensembl]
¡û
>C121006402
CP003126
Deinococcota
Thermus sp. CCB_US3_UF1 [CP003126]
1799555
1799631
+
Pro
GGG
[Ensembl]
¡û
>C161028679
CP010822
Deinococcota
Thermus aquaticus Y51MC23 [CP010822]
1716065
1716141
+
Pro
GGG
-
¡û
>W1610045307
BBBL01000033
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
1309
1385
+
Pro
GGG
[ENA]
¡û
>W1610045400
BBBN01000079
Deinococcota
Thermus sp. JCM 17653 [BBBN]
684
760
+
Pro
GGG
[ENA]
¡û
>C131002396
CP003249
Deinococcota
Thermus oshimai JL-2 [CP003249]
1665231
1665307
+
Pro
GGG
[Ensembl]
¡û
>W1610651387
LJJR01000013
Deinococcota
Thermus scotoductus [LJJR]
13666
13590
-
Pro
GGG
[ENA]
¡û
>W1710042148
BBBL01000033
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
1309
1385
+
Pro
GGG
[ENA]
¡û
>W1710042241
BBBN01000079
Deinococcota
Thermus sp. JCM 17653 [BBBN]
684
760
+
Pro
GGG
[ENA]
¡û
>W1710514624
FNBC01000001
Deinococcota
Thermus arciformis [FNBC]
154883
154807
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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