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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275517 (30 seq.)
>W1712003166
NEGB01000001
Gammaproteobacteria
Acinetobacter silvestris ANC 4999 [NEGB]
245586
245510
-
Ile
GAT
[ENA]
¡û
>W1712003278
NEGC01000005
Gammaproteobacteria
Acinetobacter sp. ANC 4470 [NEGC]
143602
143526
-
Ile
GAT
[ENA]
¡û
>W1712003648
NEGI01000001
Gammaproteobacteria
Acinetobacter sp. ANC 4648 [NEGI]
550854
550778
-
Ile
GAT
[ENA]
¡û
>W1712003882
NEGL01000002
Gammaproteobacteria
Acinetobacter sp. ANC 4654 [NEGL]
311557
311481
-
Ile
GAT
[ENA]
¡û
>W1712003962
NEGM01000003
Gammaproteobacteria
Acinetobacter sp. ANC 4973 [NEGM]
182543
182467
-
Ile
GAT
[ENA]
¡û
>W131112817
APOH01000003
Gammaproteobacteria
Acinetobacter bohemicus ANC 3994 [APOH]
128115
128039
-
Ile
GAT
[ENA]
¡û
>W131112824
APOH01000008
Gammaproteobacteria
Acinetobacter bohemicus ANC 3994 [APOH]
3798
3722
-
Ile
GAT
[ENA]
¡û
>W131112830
APOH01000009
Gammaproteobacteria
Acinetobacter bohemicus ANC 3994 [APOH]
375296
375220
-
Ile
GAT
[ENA]
¡û
>W131112839
APOH01000010
Gammaproteobacteria
Acinetobacter bohemicus ANC 3994 [APOH]
1984
2060
+
Ile
GAT
[ENA]
¡û
>W131112862
APOH01000012
Gammaproteobacteria
Acinetobacter bohemicus ANC 3994 [APOH]
1903
1979
+
Ile
GAT
[ENA]
¡û
>W131112884
APOH01000021
Gammaproteobacteria
Acinetobacter bohemicus ANC 3994 [APOH]
128115
128039
-
Ile
GAT
[ENA]
¡û
>W131112888
APOH01000025
Gammaproteobacteria
Acinetobacter bohemicus ANC 3994 [APOH]
79083
79007
-
Ile
GAT
[ENA]
¡û
>W131112893
APOH01000028
Gammaproteobacteria
Acinetobacter bohemicus ANC 3994 [APOH]
196104
196028
-
Ile
GAT
[ENA]
¡û
>WENV181371587
OFQV01021661
[OFQV] wastewater metagenome; WWTP Cannobio (Effluent)
248
172
-
Ile
GAT
[ENA]
¢þ
>WENV181379415
OFRD01001289
[OFRD] wastewater metagenome; Exp Tend CN 100WW
6963
7039
+
Ile
GAT
[ENA]
¢þ
>WENV181381689
OFRF01002601
[OFRF] wastewater metagenome; Exp Tend CN 50WW
373
449
+
Ile
GAT
[ENA]
¢þ
>WENV181836659
OGVJ01017226
[OGVJ] freshwater metagenome; freshwater
153
229
+
Ile
GAT
[ENA]
¢þ
>ENV09000952
ABSQ01002142
Freshwater sediment metagenome lwMethenol_C1
1912
1988
+
Ile
GAT
[ENA]
¡û
>W1511500903
JXBK01000001
Gammaproteobacteria
Acinetobacter harbinensis HITLi 7 [JXBK]
428809
428885
+
Ile
GAT
[ENA]
¡û
>W1511500909
JXBK01000001
Gammaproteobacteria
Acinetobacter harbinensis HITLi 7 [JXBK]
1061775
1061851
+
Ile
GAT
[ENA]
¡û
>W1511500916
JXBK01000001
Gammaproteobacteria
Acinetobacter harbinensis HITLi 7 [JXBK]
1558351
1558427
+
Ile
GAT
[ENA]
¡û
>C161083259
CP015110
Gammaproteobacteria
Acinetobacter sp. TGL-Y2 [CP015110]
25717
25793
+
Ile
GAT
[Ensembl]
¡û
>C161083261
CP015110
Gammaproteobacteria
Acinetobacter sp. TGL-Y2 [CP015110]
177862
177938
+
Ile
GAT
[Ensembl]
¡û
>C161083273
CP015110
Gammaproteobacteria
Acinetobacter sp. TGL-Y2 [CP015110]
624115
624191
+
Ile
GAT
[Ensembl]
¡û
>C161083279
CP015110
Gammaproteobacteria
Acinetobacter sp. TGL-Y2 [CP015110]
695891
695967
+
Ile
GAT
[Ensembl]
¡û
>C161083284
CP015110
Gammaproteobacteria
Acinetobacter sp. TGL-Y2 [CP015110]
1561734
1561810
+
Ile
GAT
[Ensembl]
¡û
>C161083300
CP015110
Gammaproteobacteria
Acinetobacter sp. TGL-Y2 [CP015110]
3356257
3356181
-
Ile
GAT
[Ensembl]
¡û
>C161083308
CP015110
Gammaproteobacteria
Acinetobacter sp. TGL-Y2 [CP015110]
2872156
2872080
-
Ile
GAT
[Ensembl]
¡û
>W1710531284
FNPK01000055
Gammaproteobacteria
Acinetobacter kyonggiensis [FNPK]
3794
3718
-
Ile
GAT
[ENA]
¡û
>W1710576165
FOZU01000068
Gammaproteobacteria
Acinetobacter bohemicus [FOZU]
1771
1847
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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