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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275568 (69 seq.)
>W1711581410
MNTZ01000004
Gammaproteobacteria
Acinetobacter sp. CAG:196_36_41 [MNTZ]
343968
343891
-
Asp
GTC
[ENA]
¡û
>WENV180000325
FLNU01001434
[FLNU] bioreactor metagenome; Moose rumen
7153
7076
-
Asp
GTC
[ENA]
¡û
>WENV180212527
OBAO01000001
[OBAO] human gut metagenome; human gut
294174
294097
-
Asp
GTC
[ENA]
¡û
>WENV180321316
OBKR01000010
[OBKR] human gut metagenome; feces
214432
214355
-
Asp
GTC
[ENA]
¡û
>WENV180338124
OBLI01000039
[OBLI] pig gut metagenome; faeces
90195
90118
-
Asp
GTC
[ENA]
¡û
>WENV180443430
OBWY01008079
[OBWY] human gut metagenome; faeces
2496
2419
-
Asp
GTC
[ENA]
¡û
>WENV180500216
OCAI01003959
[OCAI] human gut metagenome; faeces
2570
2647
+
Asp
GTC
[ENA]
¡û
>WENV180517476
OCHD01000551
[OCHD] human gut metagenome; human gut
10512
10589
+
Asp
GTC
[ENA]
¡û
>WENV180527721
OCHJ01000436
[OCHJ] human gut metagenome; human gut
43164
43087
-
Asp
GTC
[ENA]
¡û
>WENV180621209
OCQC01000563
[OCQC] human gut metagenome; human gut
33838
33915
+
Asp
GTC
[ENA]
¡û
>WENV180892120
ODMR01000040
[ODMR] human metagenome; G_DNA_Stool
17146
17069
-
Asp
GTC
[ENA]
¡û
>WENV181519637
OGHC01001027
[OGHC] metagenome; Human gut stool
3656
3579
-
Asp
GTC
[ENA]
¡û
>WENV181533954
OGHS01000654
[OGHS] metagenome; Human gut stool
10562
10639
+
Asp
GTC
[ENA]
¡û
>WENV181656961
OGOC01006231
[OGOC] human gut metagenome; faeces
4651
4728
+
Asp
GTC
[ENA]
¡û
>WENV181725261
OGPY01001019
[OGPY] human gut metagenome; faeces
10507
10584
+
Asp
GTC
[ENA]
¡û
>WENV181744296
OGQM01000330
[OGQM] human gut metagenome; faeces
36597
36674
+
Asp
GTC
[ENA]
¡û
>WENV181777681
OGRH01001540
[OGRH] human gut metagenome; faeces
10527
10604
+
Asp
GTC
[ENA]
¡û
>WENV181826397
OGUL01013651
[OGUL] human gut metagenome; faeces
1618
1695
+
Asp
GTC
[ENA]
¡û
>WENV182033199
OHCW01014384
[OHCW] human gut metagenome; feces
1567
1490
-
Asp
GTC
[ENA]
¡û
>WENV182036609
OHDC01002316
[OHDC] human gut metagenome; feces
2387
2464
+
Asp
GTC
[ENA]
¡û
>WENV182042468
OHDN01005678
[OHDN] human gut metagenome; feces
3607
3530
-
Asp
GTC
[ENA]
¡û
>WENV182099371
OHHR01000990
[OHHR] human gut metagenome; feces
10495
10572
+
Asp
GTC
[ENA]
¡û
>WENV182127419
OHJU01024744
[OHJU] human gut metagenome; feces
650
727
+
Asp
GTC
[ENA]
¡û
>WENV182142653
OHKU01006957
[OHKU] human gut metagenome; feces
144
221
+
Asp
GTC
[ENA]
¡û
>WENV182144827
OHKW01051923
[OHKW] human gut metagenome; feces
96
173
+
Asp
GTC
[ENA]
¡û
>WENV182194169
OHPC01000132
[OHPC] human gut metagenome; feces
51808
51885
+
Asp
GTC
[ENA]
¡û
>WENV182200659
OHPL01002179
[OHPL] human gut metagenome; feces
3678
3601
-
Asp
GTC
[ENA]
¡û
>WENV182211691
OHQF01003098
[OHQF] human gut metagenome; feces
3751
3674
-
Asp
GTC
[ENA]
¡û
>WENV182219833
OHQR01010726
[OHQR] human gut metagenome; feces
2253
2176
-
Asp
GTC
[ENA]
¡û
>WENV182275508
OHUN01000982
[OHUN] human gut metagenome; feces
10495
10572
+
Asp
GTC
[ENA]
¡û
>WENV182320687
OHYI01013067
[OHYI] human gut metagenome; feces
650
727
+
Asp
GTC
[ENA]
¡û
>WENV182413913
OIFY01024688
[OIFY] human gut metagenome; human gut
512
589
+
Asp
GTC
[ENA]
¡û
>WENV182516497
OIWO01000018
[OIWO] human gut metagenome; faeces
10881
10958
+
Asp
GTC
[ENA]
¡û
>WENV182521472
OIWQ01013299
[OIWQ] human gut metagenome; faeces
2616
2539
-
Asp
GTC
[ENA]
¡û
>WENV182638237
OJLA01009991
[OJLA] metagenome; faeces
594
671
+
Asp
GTC
[ENA]
¡û
>WENV182649714
OJMG01015673
[OJMG] human gut metagenome; feces
976
1053
+
Asp
GTC
[ENA]
¡û
>WENV182650484
OJMH01000027
[OJMH] human gut metagenome; feces
198614
198537
-
Asp
GTC
[ENA]
¡û
>WENV182654988
OJMI01014195
[OJMI] human gut metagenome; feces
2543
2466
-
Asp
GTC
[ENA]
¡û
>WENV182712948
OJPF01016725
[OJPF] human gut metagenome; stool sample
635
712
+
Asp
GTC
[ENA]
¡û
>WENV182713618
OJPG01001252
[OJPG] human gut metagenome; stool sample
3767
3690
-
Asp
GTC
[ENA]
¡û
>WENV182751141
OJRA01000030
[OJRA] human gut metagenome; stool sample
2862
2939
+
Asp
GTC
[ENA]
¡û
>WENV182753689
OJRD01000019
[OJRD] human gut metagenome; stool sample
155515
155438
-
Asp
GTC
[ENA]
¡û
>WENV182870551
OKRU01001990
[OKRU] human gut metagenome; faeces
8784
8707
-
Asp
GTC
[ENA]
¡û
>WENV182901341
OKSV01000965
[OKSV] human gut metagenome; feces
3777
3700
-
Asp
GTC
[ENA]
¡û
>WENV182911561
OKTL01001677
[OKTL] human gut metagenome; feces
6266
6189
-
Asp
GTC
[ENA]
¡û
>WENV182923723
OKUF01005399
[OKUF] human gut metagenome; feces
1677
1600
-
Asp
GTC
[ENA]
¡û
>WENV182959203
OKWJ01000016
[OKWJ] human gut metagenome; human gut
10569
10646
+
Asp
GTC
[ENA]
¡û
>WENV182968289
OKXB01001425
[OKXB] human gut metagenome; human gut
12531
12454
-
Asp
GTC
[ENA]
¡û
>WENV183028777
OLFV01007571
[OLFV] human gut metagenome; faeces
2434
2357
-
Asp
GTC
[ENA]
¡û
>WENV183040384
OLGD01000001
[OLGD] human gut metagenome; faeces
58456
58379
-
Asp
GTC
[ENA]
¡û
>WENV183071910
OLIT01000013
[OLIT] human gut metagenome; feces
226554
226477
-
Asp
GTC
[ENA]
¡û
>WENV183075397
OLIW01000017
[OLIW] human gut metagenome; feces
198646
198569
-
Asp
GTC
[ENA]
¡û
>WENV183077760
OLIX01000015
[OLIX] human gut metagenome; feces
140349
140272
-
Asp
GTC
[ENA]
¡û
>WENV183230692
OLQT01004509
[OLQT] human gut metagenome; faeces
6000
5923
-
Asp
GTC
[ENA]
¡û
>WENV183285900
OLSE01001570
[OLSE] human gut metagenome; faeces
13517
13440
-
Asp
GTC
[ENA]
¡û
>WENV183357558
OLXF01080888
[OLXF] human gut metagenome; feces
47
124
+
Asp
GTC
[ENA]
¡û
>WENV183395196
OLZH01002468
[OLZH] human gut metagenome; feces
3778
3701
-
Asp
GTC
[ENA]
¡û
>WENV183422128
OMBD01009867
[OMBD] human gut metagenome; feces
503
426
-
Asp
GTC
[ENA]
¡û
>WENV183443123
OMCM01014405
[OMCM] human gut metagenome; feces
862
785
-
Asp
GTC
[ENA]
¡û
>WENV183461404
OMDR01015997
[OMDR] human gut metagenome; feces
441
518
+
Asp
GTC
[ENA]
¡û
>WENV183472427
OMEQ01007344
[OMEQ] human gut metagenome; feces
568
491
-
Asp
GTC
[ENA]
¡û
>WENV183482368
OMFM01000583
[OMFM] human gut metagenome; feces
3778
3701
-
Asp
GTC
[ENA]
¡û
>WENV183632640
OOIF01009058
[OOIF] human gut metagenome; human gut
461
384
-
Asp
GTC
[ENA]
¡û
>WENV170084728
CEAB01026919
[CEAB] gut metagenome; human stools
10509
10586
+
Asp
GTC
[ENA]
¡û
>WENV170086876
CEAC01024724
[CEAC] gut metagenome; human stools
12955
12878
-
Asp
GTC
[ENA]
¡û
>WENV170101776
CEAR01046657
[CEAR] gut metagenome; human stools
97819
97742
-
Asp
GTC
[ENA]
¡û
>WENV170109250
CECA01070412
[CECA] gut metagenome; human stools
3324
3247
-
Asp
GTC
[ENA]
¡û
>WENV170110470
CECF01029385
[CECF] gut metagenome; human stools
115
38
-
Asp
GTC
[ENA]
¡û
>WENV170111246
CECF01067163
[CECF] gut metagenome; human stools
1692
1615
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK