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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275568 (21 seq.)
>C171098289
CP019698
Bacillota
Desulforamulus ferrireducens GSS09 [CP019698]
657774
657850
+
Asp
GTC
-
¡û
>C171098320
CP019698
Bacillota
Desulforamulus ferrireducens GSS09 [CP019698]
2970323
2970399
+
Asp
GTC
-
¡û
>W131242968
CAOS01000008
Bacillota
Desulforamulus hydrothermalis Lam5 = DSM 18033 [CAOS]
246287
246211
-
Asp
GTC
[ENA]
¡û
>W131242974
CAOS01000009
Bacillota
Desulforamulus hydrothermalis Lam5 = DSM 18033 [CAOS]
95156
95232
+
Asp
GTC
[ENA]
¡û
>W131242982
CAOS01000009
Bacillota
Desulforamulus hydrothermalis Lam5 = DSM 18033 [CAOS]
98707
98783
+
Asp
GTC
[ENA]
¡û
>WENV170686179
LFRM01130041
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
4287
4363
+
Asp
GTC
[ENA]
¢þ
>WENV170690285
LFRM01333594
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
9263
9187
-
Asp
GTC
[ENA]
¢þ
>WENV170719877
LSQX01132275
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
24922
24846
-
Asp
GTC
[ENA]
¢þ
>W09126252
ACJM01000017
Bacillota
Dethiobacter alkaliphilus AHT 1 [ACJM]
33500
33424
-
Asp
GTC
[ENA]
¡û
>C11106937
CP002736
Bacillota
Desulfotomaculum nigrificans CO-1-SRB [CP002736]
2551184
2551108
-
Asp
GTC
[Ensembl]
¡û
>C11106944
CP002736
Bacillota
Desulfotomaculum nigrificans CO-1-SRB [CP002736]
2547836
2547760
-
Asp
GTC
[Ensembl]
¡û
>C11106956
CP002736
Bacillota
Desulfotomaculum nigrificans CO-1-SRB [CP002736]
461937
461861
-
Asp
GTC
[Ensembl]
¡û
>W11150352
AEVP01000001
Bacillota
Desulfotomaculum nigrificans DSM 574 [AEVP]
13873
13949
+
Asp
GTC
[ENA]
¡û
>W11150359
AEVP01000001
Bacillota
Desulfotomaculum nigrificans DSM 574 [AEVP]
17221
17297
+
Asp
GTC
[ENA]
¡û
>W11150393
AEVP01000029
Bacillota
Desulfotomaculum nigrificans DSM 574 [AEVP]
19271
19347
+
Asp
GTC
[ENA]
¡û
>W1710583621
FQUY01000008
Bacillota
Desulforamulus putei DSM 12395 [FQUY]
40047
39971
-
Asp
GTC
[ENA]
¡û
>W1710583628
FQUY01000008
Bacillota
Desulforamulus putei DSM 12395 [FQUY]
36715
36639
-
Asp
GTC
[ENA]
¡û
>W1710583643
FQUY01000014
Bacillota
Desulforamulus putei DSM 12395 [FQUY]
1713
1637
-
Asp
GTC
[ENA]
¡û
>W1710586439
FQXF01000005
Bacillota
Desulforamulus hydrothermalis Lam5 = DSM 18033 [FQXF]
24056
24132
+
Asp
GTC
[ENA]
¡û
>W1710586470
FQXF01000016
Bacillota
Desulforamulus hydrothermalis Lam5 = DSM 18033 [FQXF]
466
390
-
Asp
GTC
[ENA]
¡û
>W1710586491
FQXF01000032
Bacillota
Desulforamulus hydrothermalis Lam5 = DSM 18033 [FQXF]
3313
3389
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK