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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275577 (5 seq.)
>WENV180345781
OBLN01005404
[OBLN] sediment metagenome; sediment
210
285
+
His
GTG
[ENA]
¡û
>WENV170657864
JTFP01027092
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
223
148
-
His
GTG
[ENA]
¡û
>C151066481
CP010311
Thermodesulfobacteriota
Geoalkalibacter subterraneus Red1 [CP010311]
1329250
1329325
+
His
GTG
[Ensembl]
¡û
>W1511480381
JWJD01000003
Thermodesulfobacteriota
Geoalkalibacter ferrihydriticus DSM 17813 [JWJD]
110625
110700
+
His
GTG
[ENA]
¡û
>W1710521941
FNGU01000003
Thermodesulfobacteriota
Geoalkalibacter ferrihydriticus [FNGU]
111187
111262
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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