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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275623 (35 seq.)
>W1711377571
MDZA01000415
Bacteroidota
Hymenobacter coccineus CCM 8649 [MDZA]
64988
65062
+
Pro
GGG
[ENA]
¡û
>W1711377583
MDZB01000073
Bacteroidota
Hymenobacter lapidarius CCM 8643 [MDZB]
48350
48424
+
Pro
GGG
[ENA]
¡û
>W1711377658
MDZC01000133
Bacteroidota
Hymenobacter glacialis CCM 8648 [MDZC]
144236
144310
+
Pro
GGG
[ENA]
¡û
>W1711726888
MTSE01000025
Bacteroidota
Hymenobacter crusticola MIMBbqt21 [MTSE]
44228
44154
-
Pro
GGG
[ENA]
¡û
>W1712105568
NIRR01000004
Bacteroidota
Hymenobacter amundsenii CCM 8682 [NIRR]
100641
100565
-
Pro
GGG
[ENA]
¡û
>W131180741
ARNJ01000040
Bacteroidota
Hymenobacter aerophilus DSM 13606 [ARNJ]
57860
57936
+
Pro
GGG
[ENA]
¡û
>W131215995
ATVL01000011
Bacteroidota
Hymenobacter norwichensis DSM 15439 [ATVL]
346362
346288
-
Pro
GGG
[ENA]
¡û
>WENV170984379
MWVV01261495
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
96
20
-
Pro
GGG
[ENA]
¢þ
>C181175103
CP029145
Bacteroidota
Hymenobacter nivis NBRC 111535 [CP029145]
3319428
3319354
-
Pro
GGG
-
¡û
>C191154905
CP037922
Bacteroidota
Hymenobacter radiodurans 17J36-26 [CP037922]
81700
81626
-
Pro
GGG
-
¡û
>C191183790
CP040896
Bacteroidota
Hymenobacter jejuensis 17J68-5 [CP040896]
1924582
1924656
+
Pro
GGG
-
¡û
>W141734706
JNLX01000083
Bacteroidota
Hymenobacter sp. IS2118 [JNLX]
18012
18088
+
Pro
GGG
[ENA]
¡û
>W1910547413
FZNS01000006
Bacteroidota
Hymenobacter mucosus DSM 28041 [FZNS]
6981
6906
-
Pro
GGG
[ENA]
¡û
>W1910651918
LYMU01000129
Bacteroidota
Hymenobacter sp. UV11 [LYMU]
304143
304068
-
Pro
GGG
[ENA]
¡û
>W1911788142
QYCN01000004
Bacteroidota
Hymenobacter rubripertinctus CCM 8852 [QYCN]
299733
299658
-
Pro
GGG
[ENA]
¡û
>W1810089905
PGFA01000004
Bacteroidota
Hymenobacter chitinivorans DSM 11115 [PGFA]
107017
106943
-
Pro
GGG
[ENA]
¡û
>W1810678977
QKNS01000005
Bacteroidota
Hymenobacter sediminis ELS1360 [QKNS]
7270
7196
-
Pro
GGG
[ENA]
¡û
>W1810912389
QVLT01000018
Bacteroidota
Hymenobacter sp. CCM 8763 [QVLT]
52317
52391
+
Pro
GGG
[ENA]
¡û
>SRA1015927
SRR023846.266341
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
76
152
+
Pro
GGG
[SRA]
>C151009406
CP006587
Bacteroidota
Hymenobacter sp. APR13 [CP006587]
1833028
1833104
+
Pro
GGG
[Ensembl]
¡û
>C151017367
CP007145
Bacteroidota
Hymenobacter swuensis DY53 [CP007145]
4689534
4689610
+
Pro
GGG
[Ensembl]
¡û
>C151064015
CP010054
Bacteroidota
Hymenobacter sp. DG25B [CP010054]
495587
495513
-
Pro
GGG
[Ensembl]
¡û
>C151096208
CP012623
Bacteroidota
Hymenobacter sp. DG25A [CP012623]
3226608
3226682
+
Pro
GGG
-
¡û
>W1511543321
JZIR01000074
Bacteroidota
Hymenobacter sp. AT01-02 [JZIR]
6849
6773
-
Pro
GGG
[ENA]
¡û
>W1511582939
LATM01000004
Bacteroidota
Hymenobacter terrenus MIMtkLc17 [LATM]
253994
253920
-
Pro
GGG
[ENA]
¡û
>C161061571
CP013909
Bacteroidota
Hymenobacter sedentarius DG5B [CP013909]
985808
985734
-
Pro
GGG
[Ensembl]
¡û
>C161070729
CP014304
Bacteroidota
Hymenobacter sp. PAMC 26628 [CP014304]
4725038
4724964
-
Pro
GGG
[Ensembl]
¡û
>C161077106
CP014771
Bacteroidota
Hymenobacter sp. PAMC 26554 [CP014771]
2820242
2820318
+
Pro
GGG
[Ensembl]
¡û
>W1710530566
FNOV01000007
Bacteroidota
Hymenobacter psychrophilus [FNOV]
64797
64873
+
Pro
GGG
[ENA]
¡û
>W1710553554
FOHS01000001
Bacteroidota
Hymenobacter actinosclerus [FOHS]
56437
56513
+
Pro
GGG
[ENA]
¡û
>W1710573728
FOXS01000002
Bacteroidota
Hymenobacter arizonensis [FOXS]
638231
638305
+
Pro
GGG
[ENA]
¡û
>W1710587449
FQYN01000001
Bacteroidota
Hymenobacter daecheongensis DSM 21074 [FQYN]
543856
543930
+
Pro
GGG
[ENA]
¡û
>W1710590092
FRAS01000001
Bacteroidota
Hymenobacter psychrotolerans DSM 18569 [FRAS]
484021
484095
+
Pro
GGG
[ENA]
¡û
>W1710605398
FWWW01000034
Bacteroidota
Hymenobacter roseosalivarius DSM 11622 [FWWW]
40047
40121
+
Pro
GGG
[ENA]
¡û
>W1710610184
FYEW01000003
Bacteroidota
Hymenobacter gelipurpurascens [FYEW]
11873
11797
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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