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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275630 (16 seq.)
>W1711713031
MTCR01000070
Bacteroidota
Sphingobacteriales bacterium TSM_CSM [MTCR]
27367
27292
-
Val
TAC
[ENA]
¡û
>W1711713032
MTCR01000070
Bacteroidota
Sphingobacteriales bacterium TSM_CSM [MTCR]
27239
27164
-
Val
TAC
[ENA]
¡û
>W1711713033
MTCR01000070
Bacteroidota
Sphingobacteriales bacterium TSM_CSM [MTCR]
27111
27036
-
Val
TAC
[ENA]
¡û
>W1711945912
NBMY01000055
Bacteroidota
Sphingobacteriales bacterium TSM_CSS [NBMY]
5091
5016
-
Val
TAC
[ENA]
¡û
>W1711945913
NBMY01000055
Bacteroidota
Sphingobacteriales bacterium TSM_CSS [NBMY]
4963
4888
-
Val
TAC
[ENA]
¡û
>W1711945914
NBMY01000055
Bacteroidota
Sphingobacteriales bacterium TSM_CSS [NBMY]
4835
4760
-
Val
TAC
[ENA]
¡û
>WENV183710986
PDWI01058005
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2482
2557
+
Val
TAC
[ENA]
¡û
>WENV183714907
PDWI01210458
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
924
999
+
Val
TAC
[ENA]
¡û
>WENV183719737
PDWJ01019467
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
5126
5201
+
Val
TAC
[ENA]
¡û
>W1810389966
PXYE01000054
Bacteroidota
Sphingobacteriales bacterium UPWRP_1 [PXYE]
27367
27292
-
Val
TAC
[ENA]
¡û
>W1810389967
PXYE01000054
Bacteroidota
Sphingobacteriales bacterium UPWRP_1 [PXYE]
27239
27164
-
Val
TAC
[ENA]
¡û
>W1810389968
PXYE01000054
Bacteroidota
Sphingobacteriales bacterium UPWRP_1 [PXYE]
27111
27036
-
Val
TAC
[ENA]
¡û
>W1810389973
PXYE01000061
Bacteroidota
Sphingobacteriales bacterium UPWRP_1 [PXYE]
5091
5016
-
Val
TAC
[ENA]
¡û
>W1810389974
PXYE01000061
Bacteroidota
Sphingobacteriales bacterium UPWRP_1 [PXYE]
4963
4888
-
Val
TAC
[ENA]
¡û
>W1810389975
PXYE01000061
Bacteroidota
Sphingobacteriales bacterium UPWRP_1 [PXYE]
4835
4760
-
Val
TAC
[ENA]
¡û
>C211197932
CP064999
Bacteroidota
Sphingobacteriales bacterium [CP064999]
5006897
5006821
-
Val
TAC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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