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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275658 (7 seq.)
>PL171000446
CP002404
Firmicutes
Ruminococcus albus 7 = DSM 20455 plasmid:pRUMAL01
99991
100067
+
Leu
CAA
[ENA]
¡û
>W141280003
JAGS01000001
Bacillota
Ruminococcus albus AD2013 [JAGS]
3700005
3700081
+
Leu
CAA
[ENA]
¡û
>W141428633
JEOB01000001
Bacillota
Ruminococcus albus SY3 [JEOB]
624268
624192
-
Leu
CAA
[ENA]
¡û
>W141428692
JEOB01000004
Bacillota
Ruminococcus albus SY3 [JEOB]
1164027
1163951
-
Leu
CAA
[ENA]
¡û
>W141561831
JHYT01000051
Bacillota
Ruminococcus albus 7 = DSM 20455 [JHYT]
5842
5766
-
Leu
CAA
[ENA]
¡û
>W10126720
AEDJ01000072
Bacillota
Ruminococcus albus 7 [AEDJ]
10855
10931
+
Leu
CAA
[ENA]
¡û
>W11133981
AEDJ01000072
Bacillota
Ruminococcus albus 7 [AEDJ]
10855
10931
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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