This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275659 (82 seq.)
>W131179612
ARMN01000025
Gammaproteobacteria
Amphritea japonica ATCC BAA-1530 [ARMN]
453252
453327
+
Gly
GCC
[ENA]
¡û
>W131179615
ARMN01000025
Gammaproteobacteria
Amphritea japonica ATCC BAA-1530 [ARMN]
453585
453660
+
Gly
GCC
[ENA]
¡û
>W131179627
ARMN01000027
Gammaproteobacteria
Amphritea japonica ATCC BAA-1530 [ARMN]
127389
127464
+
Gly
GCC
[ENA]
¡û
>WENV180108606
OAPH01204504
[OAPH] marine metagenome; seawater
9
84
+
Gly
GCC
[ENA]
¡û
>WENV180358072
OBNO01090669
[OBNO] marine metagenome; ENVO 00002150
190
115
-
Gly
GCC
[ENA]
¡û
>WENV180365499
OBOB01178581
[OBOB] marine metagenome; ENVO:00002019, 'BRACKISH WATER
12
87
+
Gly
GCC
[ENA]
¡û
>WENV170014361
AYRE01006749
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
1
76
+
Gly
GCC
[ENA]
¡û
>WENV170014409
AYRF01035027
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
232
157
-
Gly
GCC
[ENA]
¡û
>WENV170014587
AYRH01020484
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
76
1
-
Gly
GCC
[ENA]
¡û
>WENV170298237
CESF01074755
[CESF] marine metagenome genome assembly TARA_093_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
153
228
+
Gly
GCC
[ENA]
¡û
>WENV170625289
FUWD013195269
[FUWD] metagenome; unknown
7136
7211
+
Gly
GCC
[ENA]
¡û
>WENV170625291
FUWD013195269
[FUWD] metagenome; unknown
7698
7773
+
Gly
GCC
[ENA]
¡û
>WENV170633529
FUWD013398081
[FUWD] metagenome; unknown
7136
7211
+
Gly
GCC
[ENA]
¡û
>WENV170633531
FUWD013398081
[FUWD] metagenome; unknown
7698
7773
+
Gly
GCC
[ENA]
¡û
>WENV170704580
LLEL01002018
[LLEL] bioreactor metagenome; day35 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
303
378
+
Gly
GCC
[ENA]
¡û
>WENV170704595
LLEL01005298
[LLEL] bioreactor metagenome; day35 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
249
174
-
Gly
GCC
[ENA]
¡û
>WENV170704628
LLEL01014136
[LLEL] bioreactor metagenome; day35 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
77
2
-
Gly
GCC
[ENA]
¡û
>WENV170704681
LLEL01034498
[LLEL] bioreactor metagenome; day35 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
33
108
+
Gly
GCC
[ENA]
¡û
>W2011482865
RQXV01000001
Gammaproteobacteria
Amphritea balenae JAMM 1525 [RQXV]
972807
972732
-
Gly
GCC
[ENA]
¡û
>W2011482867
RQXV01000001
Gammaproteobacteria
Amphritea balenae JAMM 1525 [RQXV]
972366
972291
-
Gly
GCC
[ENA]
¡û
>W2011482910
RQXV01000009
Gammaproteobacteria
Amphritea balenae JAMM 1525 [RQXV]
70410
70335
-
Gly
GCC
[ENA]
¡û
>W2011482913
RQXV01000009
Gammaproteobacteria
Amphritea balenae JAMM 1525 [RQXV]
70097
70022
-
Gly
GCC
[ENA]
¡û
>W2011482936
RQXW01000001
Gammaproteobacteria
Amphritea sp. MCCC 1K03512 ANRC-JH13 [RQXW]
484957
484882
-
Gly
GCC
[ENA]
¡û
>W2011482939
RQXW01000001
Gammaproteobacteria
Amphritea sp. MCCC 1K03512 ANRC-JH13 [RQXW]
478336
478261
-
Gly
GCC
[ENA]
¡û
>W2011482981
RQXW01000015
Gammaproteobacteria
Amphritea sp. MCCC 1K03512 ANRC-JH13 [RQXW]
81971
81896
-
Gly
GCC
[ENA]
¡û
>W2011482983
RQXW01000015
Gammaproteobacteria
Amphritea sp. MCCC 1K03512 ANRC-JH13 [RQXW]
81522
81447
-
Gly
GCC
[ENA]
¡û
>W2110033925
BMOH01000001
Gammaproteobacteria
Amphritea balenae JCM 14781 [BMOH]
19777
19852
+
Gly
GCC
[ENA]
¡û
>W2110033927
BMOH01000001
Gammaproteobacteria
Amphritea balenae JCM 14781 [BMOH]
20218
20293
+
Gly
GCC
[ENA]
¡û
>W2110033981
BMOH01000008
Gammaproteobacteria
Amphritea balenae JCM 14781 [BMOH]
70917
70842
-
Gly
GCC
[ENA]
¡û
>W2110033984
BMOH01000008
Gammaproteobacteria
Amphritea balenae JCM 14781 [BMOH]
70604
70529
-
Gly
GCC
[ENA]
¡û
>W2110313375
JADEYS010000002
Gammaproteobacteria
Pontibacterium sp. N1Y112 [JADEYS]
247572
247647
+
Gly
GCC
[ENA]
¡û
>W2110313378
JADEYS010000002
Gammaproteobacteria
Pontibacterium sp. N1Y112 [JADEYS]
247961
248036
+
Gly
GCC
[ENA]
¡û
>W2110313380
JADEYS010000002
Gammaproteobacteria
Pontibacterium sp. N1Y112 [JADEYS]
248142
248217
+
Gly
GCC
[ENA]
¡û
>W2110496042
JAFFZO010000003
Gammaproteobacteria
Amphritea sp. ZJ14W [JAFFZO]
108415
108340
-
Gly
GCC
[ENA]
¡û
>W2110496045
JAFFZO010000003
Gammaproteobacteria
Amphritea sp. ZJ14W [JAFFZO]
108086
108011
-
Gly
GCC
[ENA]
¡û
>W2110496060
JAFFZO010000011
Gammaproteobacteria
Amphritea sp. ZJ14W [JAFFZO]
101400
101475
+
Gly
GCC
[ENA]
¡û
>W2110496062
JAFFZO010000011
Gammaproteobacteria
Amphritea sp. ZJ14W [JAFFZO]
101782
101857
+
Gly
GCC
[ENA]
¡û
>W2110496135
JAFFZP010000015
Gammaproteobacteria
Amphritea sp. RP18W [JAFFZP]
88194
88269
+
Gly
GCC
[ENA]
¡û
>W2110496138
JAFFZP010000015
Gammaproteobacteria
Amphritea sp. RP18W [JAFFZP]
88523
88598
+
Gly
GCC
[ENA]
¡û
>W2110496161
JAFFZP010000047
Gammaproteobacteria
Amphritea sp. RP18W [JAFFZP]
19499
19424
-
Gly
GCC
[ENA]
¡û
>W2110496163
JAFFZP010000047
Gammaproteobacteria
Amphritea sp. RP18W [JAFFZP]
19117
19042
-
Gly
GCC
[ENA]
¡û
>W2110500787
JAFIDL010000001
Gammaproteobacteria
Amphritea spongicola JCM 16668 [JAFIDL]
764681
764606
-
Gly
GCC
[ENA]
¡û
>W2110500790
JAFIDL010000001
Gammaproteobacteria
Amphritea spongicola JCM 16668 [JAFIDL]
760910
760835
-
Gly
GCC
[ENA]
¡û
>W2110500791
JAFIDL010000001
Gammaproteobacteria
Amphritea spongicola JCM 16668 [JAFIDL]
760776
760701
-
Gly
GCC
[ENA]
¡û
>W2110500798
JAFIDL010000003
Gammaproteobacteria
Amphritea spongicola JCM 16668 [JAFIDL]
168808
168883
+
Gly
GCC
[ENA]
¡û
>W2110500800
JAFIDL010000003
Gammaproteobacteria
Amphritea spongicola JCM 16668 [JAFIDL]
169218
169293
+
Gly
GCC
[ENA]
¡û
>W2110612308
JAHKQE010000030
Gammaproteobacteria
Amphritea atlantica C1R06 [JAHKQE]
273970
274045
+
Gly
GCC
[ENA]
¡û
>W2110612311
JAHKQE010000030
Gammaproteobacteria
Amphritea atlantica C1R06 [JAHKQE]
280679
280754
+
Gly
GCC
[ENA]
¡û
>W2110612330
JAHKQE010000044
Gammaproteobacteria
Amphritea atlantica C1R06 [JAHKQE]
47307
47232
-
Gly
GCC
[ENA]
¡û
>W2110612332
JAHKQE010000044
Gammaproteobacteria
Amphritea atlantica C1R06 [JAHKQE]
46801
46726
-
Gly
GCC
[ENA]
¡û
>C211000086
AP014545
Gammaproteobacteria
Amphritea japonica ATCC BAA-1530 [AP014545]
1843300
1843375
+
Gly
GCC
-
¡û
>C211000089
AP014545
Gammaproteobacteria
Amphritea japonica ATCC BAA-1530 [AP014545]
1843633
1843708
+
Gly
GCC
-
¡û
>C211000118
AP014545
Gammaproteobacteria
Amphritea japonica ATCC BAA-1530 [AP014545]
2935995
2935920
-
Gly
GCC
-
¡û
>C211000120
AP014545
Gammaproteobacteria
Amphritea japonica ATCC BAA-1530 [AP014545]
2935619
2935544
-
Gly
GCC
-
¡û
>C231011268
AP025281
Gammaproteobacteria
Aliamphritea hakodatensis PT3 [AP025281]
4049212
4049137
-
Gly
GCC
-
¡û
>C231011270
AP025281
Gammaproteobacteria
Aliamphritea hakodatensis PT3 [AP025281]
4048792
4048717
-
Gly
GCC
-
¡û
>C231011291
AP025281
Gammaproteobacteria
Aliamphritea hakodatensis PT3 [AP025281]
2678443
2678368
-
Gly
GCC
-
¡û
>C231011294
AP025281
Gammaproteobacteria
Aliamphritea hakodatensis PT3 [AP025281]
2631714
2631639
-
Gly
GCC
-
¡û
>C231011295
AP025281
Gammaproteobacteria
Aliamphritea hakodatensis PT3 [AP025281]
2631579
2631504
-
Gly
GCC
-
¡û
>C231011346
AP025282
Gammaproteobacteria
Aliamphritea ceti KCTC 42154 [AP025282]
4100053
4099978
-
Gly
GCC
-
¡û
>C231011348
AP025282
Gammaproteobacteria
Aliamphritea ceti KCTC 42154 [AP025282]
4099611
4099536
-
Gly
GCC
-
¡û
>C231011370
AP025282
Gammaproteobacteria
Aliamphritea ceti KCTC 42154 [AP025282]
2824133
2824058
-
Gly
GCC
-
¡û
>C231011373
AP025282
Gammaproteobacteria
Aliamphritea ceti KCTC 42154 [AP025282]
2779605
2779530
-
Gly
GCC
-
¡û
>C231011374
AP025282
Gammaproteobacteria
Aliamphritea ceti KCTC 42154 [AP025282]
2779470
2779395
-
Gly
GCC
-
¡û
>C231011421
AP025283
Gammaproteobacteria
Aliamphritea spongicola JCM 16668 [AP025283]
3792556
3792481
-
Gly
GCC
-
¡û
>C231011422
AP025283
Gammaproteobacteria
Aliamphritea spongicola JCM 16668 [AP025283]
3792150
3792075
-
Gly
GCC
-
¡û
>C231011442
AP025283
Gammaproteobacteria
Aliamphritea spongicola JCM 16668 [AP025283]
2540674
2540599
-
Gly
GCC
-
¡û
>C231011445
AP025283
Gammaproteobacteria
Aliamphritea spongicola JCM 16668 [AP025283]
2536911
2536836
-
Gly
GCC
-
¡û
>C231011446
AP025283
Gammaproteobacteria
Aliamphritea spongicola JCM 16668 [AP025283]
2536777
2536702
-
Gly
GCC
-
¡û
>C231011496
AP025284
Gammaproteobacteria
Amphritea atlantica JCM 14776 [AP025284]
3776385
3776310
-
Gly
GCC
-
¡û
>C231011498
AP025284
Gammaproteobacteria
Amphritea atlantica JCM 14776 [AP025284]
3776003
3775928
-
Gly
GCC
-
¡û
>C231011517
AP025284
Gammaproteobacteria
Amphritea atlantica JCM 14776 [AP025284]
2436649
2436574
-
Gly
GCC
-
¡û
>C231011520
AP025284
Gammaproteobacteria
Amphritea atlantica JCM 14776 [AP025284]
2436320
2436245
-
Gly
GCC
-
¡û
>C231019760
AP025761
Gammaproteobacteria
Amphritea japonica JCM 14782 [AP025761]
1867565
1867640
+
Gly
GCC
-
¡û
>C231019763
AP025761
Gammaproteobacteria
Amphritea japonica JCM 14782 [AP025761]
1867898
1867973
+
Gly
GCC
-
¡û
>C231019789
AP025761
Gammaproteobacteria
Amphritea japonica JCM 14782 [AP025761]
2975788
2975713
-
Gly
GCC
-
¡û
>C231019791
AP025761
Gammaproteobacteria
Amphritea japonica JCM 14782 [AP025761]
2975412
2975337
-
Gly
GCC
-
¡û
>WENV078003
AAFY01004491
Fossil microbial community from Whale Fall (Santa Cruz Basin)
367
444
+
Gly
GCC
[ENA]
>W1710551411
FOGB01000005
Gammaproteobacteria
Amphritea atlantica [FOGB]
48562
48487
-
Gly
GCC
[ENA]
¡û
>W1710551413
FOGB01000005
Gammaproteobacteria
Amphritea atlantica [FOGB]
48180
48105
-
Gly
GCC
[ENA]
¡û
>W1710551420
FOGB01000007
Gammaproteobacteria
Amphritea atlantica [FOGB]
128047
128122
+
Gly
GCC
[ENA]
¡û
>W1710551423
FOGB01000007
Gammaproteobacteria
Amphritea atlantica [FOGB]
128376
128451
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK