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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275667 (49 seq.)
>C171064529
CP017622
Alphaproteobacteria
Ketogulonicigenium vulgare SPU B805 [CP017622]
1214151
1214227
+
Pro
TGG
-
¡û
>C171101138
CP019937
Alphaproteobacteria
Ketogulonicigenium robustum SPU_B003 [CP019937]
863327
863403
+
Pro
TGG
-
¡û
>C171118939
CP021431
Alphaproteobacteria
Yoonia vestfoldensis SMR4r [CP021431]
1275209
1275285
+
Pro
TGG
-
¡û
>w023679
AAYB01000003
Alphaproteobacteria
Roseobacter sp. CCS2 [AAYB]
214455
214531
+
Pro
TGG
[ENA]
¡û
>w012735
AAMS01000003
Alphaproteobacteria
Yoonia vestfoldensis SKA53 [AAMS]
385717
385795
+
Pro
TGG
[ENA]
¡û
>WENV180043080
LQAH01001495
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
1249
1173
-
Pro
TGG
[ENA]
¢þ
>WENV182541574
OJAU01000049
[OJAU] seawater metagenome; Sea water
68192
68268
+
Pro
TGG
[ENA]
¢þ
>WENV182543814
OJBD01000007
[OJBD] seawater metagenome; Sea water
72340
72264
-
Pro
TGG
[ENA]
¢þ
>WENV182544877
OJBK01003300
[OJBK] seawater metagenome; Sea water
1072
1148
+
Pro
TGG
[ENA]
¢þ
>WENV182546066
OJBO01000652
[OJBO] seawater metagenome; Sea water
6256
6180
-
Pro
TGG
[ENA]
¢þ
>WENV182546557
OJBP01000176
[OJBP] seawater metagenome; Sea water
4629
4553
-
Pro
TGG
[ENA]
¢þ
>WENV182548991
OJBX01004710
[OJBX] seawater metagenome; Sea water
1191
1115
-
Pro
TGG
[ENA]
¢þ
>WENV182549376
OJBY01000499
[OJBY] seawater metagenome; Sea water
8068
7992
-
Pro
TGG
[ENA]
¢þ
>WENV182555452
OJDA01001005
[OJDA] seawater metagenome; Sea water
594
518
-
Pro
TGG
[ENA]
¢þ
>WENV182563989
OJED01013689
[OJED] seawater metagenome; Sea water
428
352
-
Pro
TGG
[ENA]
¢þ
>WENV182579465
OJGS01012200
[OJGS] seawater metagenome; Sea water
807
731
-
Pro
TGG
[ENA]
¢þ
>WENV182583786
OJHE01007417
[OJHE] seawater metagenome; Sea water
192
268
+
Pro
TGG
[ENA]
¢þ
>WENV183060583
OLHY01000440
[OLHY] seawater metagenome; Sea water
6248
6172
-
Pro
TGG
[ENA]
¢þ
>WENV170023067
BCQK01116098
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
402
326
-
Pro
TGG
[ENA]
¢þ
>WENV170023587
BCQL01000106
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
11859
11783
-
Pro
TGG
[ENA]
¢þ
>WENV170024781
BCQL01125423
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
566
490
-
Pro
TGG
[ENA]
¢þ
>WENV170620411
FUWD013031172
[FUWD] metagenome; unknown
2826
2902
+
Pro
TGG
[ENA]
¢þ
>WENV170628553
FUWD013248704
[FUWD] metagenome; unknown
2826
2902
+
Pro
TGG
[ENA]
¢þ
>C191184396
CP040932
Alphaproteobacteria
Oceanicola sp. D3 [CP040932]
1736502
1736578
+
Pro
TGG
-
¡û
>W1910285101
FREV01000003
Alphaproteobacteria
Loktanella sp. Alg231-35 [FREV]
429699
429775
+
Pro
TGG
[ENA]
¡û
>W1910499043
FXXQ01000001
Alphaproteobacteria
Boseongicola aestuarii CECT 8489 [FXXQ]
555637
555561
-
Pro
TGG
[ENA]
¡û
>W1911652517
QBBT01000040
Alphaproteobacteria
Pseudooceanicola algae Lw-13e [QBBT]
493216
493140
-
Pro
TGG
[ENA]
¡û
>W1911749907
QWJJ01000004
Alphaproteobacteria
Pseudooceanicola sediminis CY03 [QWJJ]
156342
156266
-
Pro
TGG
[ENA]
¡û
>W1810102028
PGTY01000001
Alphaproteobacteria
Yoonia maricola DSM 29128 [PGTY]
426828
426904
+
Pro
TGG
[ENA]
¡û
>W1810185207
PKFN01000007
Alphaproteobacteria
Yoonia maritima YPC211 [PKFN]
876462
876386
-
Pro
TGG
[ENA]
¡û
>W1810364912
PVTP01000003
Alphaproteobacteria
Yoonia maritima DSM 101533 [PVTP]
129748
129672
-
Pro
TGG
[ENA]
¡û
>W1810514021
QBUD01000001
Alphaproteobacteria
Yoonia sediminilitoris DSM 29955 [QBUD]
903115
903191
+
Pro
TGG
[ENA]
¡û
>W1810658634
QJJL01000002
Alphaproteobacteria
Loktanella sp. PT4BL [QJJL]
497429
497353
-
Pro
TGG
[ENA]
¡û
>W1810725064
QOCG01000009
Alphaproteobacteria
Loktanella sp. D2R18 [QOCG]
122537
122461
-
Pro
TGG
[ENA]
¡û
>W1810759640
QPJP01000001
Alphaproteobacteria
Yoonia sediminilitoris CECT 8284 [QPJP]
903115
903191
+
Pro
TGG
[ENA]
¡û
>SRA1052739
SRR035098.264886
454 Sequencing (SRP001819)
104
28
-
Pro
TGG
[SRA]
>SRA1053409
SRR035098.400457
454 Sequencing (SRP001819)
78
154
+
Pro
TGG
[SRA]
>SRA1053592
SRR035098.446745
454 Sequencing (SRP001819)
142
218
+
Pro
TGG
[SRA]
>C11111797
CP002018
Alphaproteobacteria
Ketogulonicigenium vulgare WSH-001 [CP002018]
668872
668948
+
Pro
TGG
[Ensembl]
¡û
>C11111863
CP002224
Alphaproteobacteria
Ketogulonicigenium vulgare Y25 [CP002224]
1074480
1074556
+
Pro
TGG
[Ensembl]
¡û
>W1511518647
JXYE01000002
Alphaproteobacteria
Loktanella sp. S4079 [JXYE]
527610
527686
+
Pro
TGG
[ENA]
¡û
>C161047254
CP012908
Alphaproteobacteria
Ketogulonicigenium vulgare Hbe602 [CP012908]
1060092
1060168
+
Pro
TGG
-
¡û
>C161099981
CP016592
Alphaproteobacteria
Ketogulonicigenium vulgare SKV [CP016592]
1059923
1059999
+
Pro
TGG
-
¡û
>W1610628515
LIGP01000001
Alphaproteobacteria
Loktanella sp. 1ANDIMAR09 [LIGP]
549413
549489
+
Pro
TGG
[ENA]
¡û
>W1610641280
LJAL01000002
Alphaproteobacteria
Loktanella sp. 5RATIMAR09 [LJAL]
309880
309956
+
Pro
TGG
[ENA]
¡û
>W1710574872
FOYP01000001
Alphaproteobacteria
Yoonia tamlensis [FOYP]
1085133
1085209
+
Pro
TGG
[ENA]
¡û
>W1710575799
FOZM01000001
Alphaproteobacteria
Yoonia litorea [FOZM]
1362751
1362675
-
Pro
TGG
[ENA]
¡û
>W1710594756
FSRL01000001
Alphaproteobacteria
Vannielia litorea litoreus [FSRL]
1167636
1167712
+
Pro
TGG
[ENA]
¡û
>W1710600090
FTPR01000001
Alphaproteobacteria
Yoonia rosea [FTPR]
510283
510359
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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