This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275680 (15 seq.)
>A171003619
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
477508
477582
+
Ile
GAT
-
¡û
>A171006623
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
1369792
1369866
+
Ile
GAT
-
¡û
>W141000113
AADL01001652
Unclassified
mine drainage metagenome Group III [AADL]
5938
6012
+
Ile
GAT
[ENA]
¡û
>W1910585065
JYHS01000001
Unclassified
Acidiplasma sp. MBA-1 [JYHS]
343617
343691
+
Ile
GAT
[ENA]
¡û
>A241003674
CP133597
Thermoplasmatota
Ferroplasma sp. [CP133597]
1654831
1654905
+
Ile
GAT
-
¡û
>A241003705
CP133599
Thermoplasmatota
Acidiplasma sp. [CP133599]
1675030
1675104
+
Ile
GAT
-
¡û
>A241003728
CP133600
Thermoplasmatota
Ferroplasma acidiphilum [CP133600]
982388
982462
+
Ile
GAT
-
¡û
>W2010602144
JABGBP010000310
Thermoplasmatota
Ferroplasma acidiphilum DSM 28986 [JABGBP]
3937
3862
-
Ile
GAT
[ENA]
¡û
>W2010764568
JYHS01000001
Unclassified
Acidiplasma sp. MBA-1 [JYHS]
343617
343691
+
Ile
GAT
[ENA]
¡û
>W1610000059
AABC05000009
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
14656
14730
+
Ile
GAT
[ENA]
¡û
>W1610047600
BBDK01000031
Unclassified
Acidiplasma cupricumulans JCM 13668 [BBDK]
5450
5376
-
Ile
GAT
[ENA]
¡û
>W1610642302
LJCQ01000179
Unclassified
Acidiplasma aeolicum V [LJCQ]
7137
7063
-
Ile
GAT
[ENA]
¡û
>W1610670455
LKBG01000078
Unclassified
Acidiplasma aeolicum VT [LKBG]
11875
11949
+
Ile
GAT
[ENA]
¡û
>W1610670493
LKBH01000066
Unclassified
Acidiplasma cupricumulans BH2 [LKBH]
1010
936
-
Ile
GAT
[ENA]
¡û
>WENV077121
AADL01001652
Acid Mine Drainage microbial communities from Richmond mine
5938
6015
+
Ile
GAT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK