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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275680 (111 seq.)
>W1710855712
LLYZ01000004
Bacteroidota
Chryseobacterium aquaticum [LLYZ]
225106
225030
-
Arg
TCT
[ENA]
¡û
>W1710855738
LLYZ01000012
Bacteroidota
Chryseobacterium aquaticum [LLYZ]
316
240
-
Arg
TCT
[ENA]
¡û
>W1710857444
LMAH01000002
Bacteroidota
Chryseobacterium sp. JAH [LMAH]
691192
691268
+
Arg
TCT
[ENA]
¡û
>W1710857446
LMAH01000002
Bacteroidota
Chryseobacterium sp. JAH [LMAH]
691965
692041
+
Arg
TCT
[ENA]
¡û
>W1710857511
LMAI01000004
Bacteroidota
Chryseobacterium aquaticum greenlandense [LMAI]
101994
102070
+
Arg
TCT
[ENA]
¡û
>W1710857513
LMAI01000004
Bacteroidota
Chryseobacterium aquaticum greenlandense [LMAI]
102771
102847
+
Arg
TCT
[ENA]
¡û
>W1710877872
LMQM01000003
Bacteroidota
Chryseobacterium sp. Leaf404 [LMQM]
99809
99883
+
Arg
TCT
[ENA]
¡û
>W1710877876
LMQM01000010
Bacteroidota
Chryseobacterium sp. Leaf404 [LMQM]
71051
71127
+
Arg
TCT
[ENA]
¡û
>W1710877941
LMQN01000012
Bacteroidota
Chryseobacterium sp. Leaf405 [LMQN]
442650
442574
-
Arg
TCT
[ENA]
¡û
>W1710877943
LMQN01000012
Bacteroidota
Chryseobacterium sp. Leaf405 [LMQN]
441914
441838
-
Arg
TCT
[ENA]
¡û
>W1711072008
LSHB01000049
Bacteroidota
Chryseobacterium sp. FP211-J200 J200 [LSHB]
14702
14626
-
Arg
TCT
[ENA]
¡û
>W1711072010
LSHB01000049
Bacteroidota
Chryseobacterium sp. FP211-J200 J200 [LSHB]
14427
14351
-
Arg
TCT
[ENA]
¡û
>W1711487692
MKGI01000005
Bacteroidota
Cloacibacterium normanense [MKGI]
188364
188440
+
Arg
TCT
[ENA]
¡û
>W131220973
AUAA01000071
Bacteroidota
Epilithonimonas tenax DSM 16811 [AUAA]
5900
5976
+
Arg
TCT
[ENA]
¡û
>W131220975
AUAA01000071
Bacteroidota
Epilithonimonas tenax DSM 16811 [AUAA]
6173
6249
+
Arg
TCT
[ENA]
¡û
>WENV180283888
OBID01005465
[OBID] metagenome; sludge
3544
3618
+
Arg
TCT
[ENA]
¢þ
>WENV181385380
OFRI01077486
[OFRI] wastewater metagenome; Exp Tend VB 90WW
540
614
+
Arg
TCT
[ENA]
¢þ
>W141291551
JASZ01000333
Bacteroidota
Kaistella haifensis DSM 19056 [JASZ]
7303
7377
+
Arg
TCT
[ENA]
¡û
>WENV170658352
JTFP01092050
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
713
787
+
Arg
TCT
[ENA]
¢þ
>C191099951
CP033070
Bacteroidota
Chryseobacterium sp. 3008163 [CP033070]
3599655
3599581
-
Arg
TCT
-
¡û
>C191099953
CP033070
Bacteroidota
Chryseobacterium sp. 3008163 [CP033070]
3529950
3529876
-
Arg
TCT
-
¡û
>C191115356
CP033917
Bacteroidota
Chryseobacterium sp. G0201 [CP033917]
2677819
2677745
-
Arg
TCT
-
¡û
>C191115358
CP033917
Bacteroidota
Chryseobacterium sp. G0201 [CP033917]
2677182
2677108
-
Arg
TCT
-
¡û
>C191115464
CP033920
Bacteroidota
Chryseobacterium carnipullorum G0188 [CP033920]
38585
38659
+
Arg
TCT
-
¡û
>C191115564
CP033921
Bacteroidota
Chryseobacterium carnipullorum F9942 [CP033921]
3522555
3522629
+
Arg
TCT
-
¡û
>C191116058
CP033928
Bacteroidota
Chryseobacterium indoltheticum G0211 [CP033928]
1400177
1400251
+
Arg
TCT
-
¡û
>C191116060
CP033928
Bacteroidota
Chryseobacterium indoltheticum G0211 [CP033928]
1403496
1403570
+
Arg
TCT
-
¡û
>C191116169
CP033929
Bacteroidota
Chryseobacterium indoltheticum ATCC 27950 [CP033929]
1626030
1625956
-
Arg
TCT
-
¡û
>C191116171
CP033929
Bacteroidota
Chryseobacterium indoltheticum ATCC 27950 [CP033929]
1623236
1623162
-
Arg
TCT
-
¡û
>C191116469
CP033933
Bacteroidota
Kaistella haifensis G0079 [CP033933]
2679367
2679443
+
Arg
TCT
-
¡û
>C191116513
CP033934
Bacteroidota
Chryseobacterium balustinum KC_1863 [CP033934]
2913800
2913874
+
Arg
TCT
-
¡û
>C191116515
CP033934
Bacteroidota
Chryseobacterium balustinum KC_1863 [CP033934]
2918024
2918098
+
Arg
TCT
-
¡û
>C191120392
CP034157
Bacteroidota
Cloacibacterium normanense NRS-1 [CP034157]
1469207
1469281
+
Arg
TCT
-
¡û
>W141806167
JPLY01000003
Bacteroidota
Epilithonimonas lactis [JPLY]
129574
129498
-
Arg
TCT
[ENA]
¡û
>W141806169
JPLY01000003
Bacteroidota
Epilithonimonas lactis [JPLY]
129304
129228
-
Arg
TCT
[ENA]
¡û
>W141806201
JPLZ01000005
Bacteroidota
Chryseobacterium sp. FH1 FH1 [JPLZ]
49825
49901
+
Arg
TCT
[ENA]
¡û
>W141809177
JPRH01000003
Bacteroidota
Chryseobacterium soli [JPRH]
296486
296410
-
Arg
TCT
[ENA]
¡û
>W141809179
JPRH01000003
Bacteroidota
Chryseobacterium soli [JPRH]
290438
290364
-
Arg
TCT
[ENA]
¡û
>W141809220
JPRI01000002
Bacteroidota
Chryseobacterium vrystaatense [JPRI]
369866
369940
+
Arg
TCT
[ENA]
¡û
>W141809495
JPRN01000014
Bacteroidota
Chryseobacterium sp. JM1 [JPRN]
122766
122840
+
Arg
TCT
[ENA]
¡û
>W141809546
JPRO01000005
Bacteroidota
Chryseobacterium luteum [JPRO]
24047
24121
+
Arg
TCT
[ENA]
¡û
>W141809548
JPRO01000005
Bacteroidota
Chryseobacterium luteum [JPRO]
30842
30916
+
Arg
TCT
[ENA]
¡û
>W1910808713
MUGO01000024
Bacteroidota
Chryseobacterium piscicola DSM 21068 [MUGO]
154530
154604
+
Arg
TCT
[ENA]
¡û
>W1910808715
MUGO01000024
Bacteroidota
Chryseobacterium piscicola DSM 21068 [MUGO]
158583
158657
+
Arg
TCT
[ENA]
¡û
>W1910808748
MUGP01000002
Bacteroidota
Chryseobacterium shigense DSM 17126 [MUGP]
378947
378873
-
Arg
TCT
[ENA]
¡û
>W1911701725
QNVS01000033
Bacteroidota
Chryseobacterium piscium CCUG 51923 [QNVS]
14275
14349
+
Arg
TCT
[ENA]
¡û
>W1911701727
QNVS01000033
Bacteroidota
Chryseobacterium piscium CCUG 51923 [QNVS]
18174
18248
+
Arg
TCT
[ENA]
¡û
>W1911702021
QNVW01000021
Bacteroidota
Chryseobacterium sp. 5_R23647 [QNVW]
109
183
+
Arg
TCT
[ENA]
¡û
>W1911702023
QNVW01000021
Bacteroidota
Chryseobacterium sp. 5_R23647 [QNVW]
4864
4938
+
Arg
TCT
[ENA]
¡û
>W1911708519
QOVY01000005
Bacteroidota
Chryseobacterium sp. SC28 [QOVY]
142335
142261
-
Arg
TCT
[ENA]
¡û
>W1810071787
PEEX01000001
Bacteroidota
Chryseobacterium sp. 52 [PEEX]
1709328
1709254
-
Arg
TCT
[ENA]
¡û
>W1810071789
PEEX01000001
Bacteroidota
Chryseobacterium sp. 52 [PEEX]
1699883
1699809
-
Arg
TCT
[ENA]
¡û
>W1810193858
PKNN01000001
Bacteroidota
Chryseobacterium scophthalmum VV8 [PKNN]
258466
258392
-
Arg
TCT
[ENA]
¡û
>W1810304692
PTPZ01000001
Bacteroidota
Cloacibacterium normanense IMET F [PTPZ]
219371
219297
-
Arg
TCT
[ENA]
¡û
>W1810707204
QNFY01000005
Bacteroidota
Chryseobacterium lathyri KCTC 22544 [QNFY]
167640
167566
-
Arg
TCT
[ENA]
¡û
>W1511432288
JUGK01000011
Bacteroidota
Chryseobacterium sp. YR005 [JUGK]
61036
60960
-
Arg
TCT
[ENA]
¡û
>W1511432290
JUGK01000011
Bacteroidota
Chryseobacterium sp. YR005 [JUGK]
60264
60188
-
Arg
TCT
[ENA]
¡û
>W1511433028
JUGX01000019
Bacteroidota
Chryseobacterium sp. OV715 [JUGX]
44644
44568
-
Arg
TCT
[ENA]
¡û
>W1511433030
JUGX01000019
Bacteroidota
Chryseobacterium sp. OV715 [JUGX]
31497
31423
-
Arg
TCT
[ENA]
¡û
>W1511699500
LGIP01000016
Bacteroidota
Chryseobacterium sp. Hurlbut01 [LGIP]
1110
1034
-
Arg
TCT
[ENA]
¡û
>W1511699524
LGIP01000022
Bacteroidota
Chryseobacterium sp. Hurlbut01 [LGIP]
40438
40514
+
Arg
TCT
[ENA]
¡û
>C161084419
CP015199
Bacteroidota
Chryseobacterium glaciei IHBB 10212 [CP015199]
748284
748360
+
Arg
TCT
[Ensembl]
¡û
>C161084421
CP015199
Bacteroidota
Chryseobacterium glaciei IHBB 10212 [CP015199]
749224
749300
+
Arg
TCT
[Ensembl]
¡û
>W1610095082
CYUH01000012
Bacteroidota
Chryseobacterium senegalense FF12 [CYUH]
36767
36843
+
Arg
TCT
[ENA]
¡û
>W1610596829
LELA01000046
Bacteroidota
Chryseobacterium sp. BGARF1 [LELA]
92
18
-
Arg
TCT
[ENA]
¡û
>W1610597205
LFEG01000033
Bacteroidota
Chryseobacterium sp. MOF25P [LFEG]
14676
14750
+
Arg
TCT
[ENA]
¡û
>W1610634200
LIRF01000006
Bacteroidota
Chryseobacterium sp. ERMR1:04 [LIRF]
256453
256379
-
Arg
TCT
[ENA]
¡û
>W1610634202
LIRF01000006
Bacteroidota
Chryseobacterium sp. ERMR1:04 [LIRF]
253911
253835
-
Arg
TCT
[ENA]
¡û
>W1610634204
LIRF01000006
Bacteroidota
Chryseobacterium sp. ERMR1:04 [LIRF]
253687
253613
-
Arg
TCT
[ENA]
¡û
>W1610634206
LIRF01000006
Bacteroidota
Chryseobacterium sp. ERMR1:04 [LIRF]
241706
241632
-
Arg
TCT
[ENA]
¡û
>W1610718093
LLYZ01000004
Bacteroidota
Chryseobacterium aquaticum [LLYZ]
225106
225030
-
Arg
TCT
[ENA]
¡û
>W1610718119
LLYZ01000012
Bacteroidota
Chryseobacterium aquaticum [LLYZ]
316
240
-
Arg
TCT
[ENA]
¡û
>W1610719825
LMAH01000002
Bacteroidota
Chryseobacterium sp. JAH [LMAH]
691192
691268
+
Arg
TCT
[ENA]
¡û
>W1610719827
LMAH01000002
Bacteroidota
Chryseobacterium sp. JAH [LMAH]
691965
692041
+
Arg
TCT
[ENA]
¡û
>W1610719892
LMAI01000004
Bacteroidota
Chryseobacterium aquaticum greenlandense [LMAI]
101994
102070
+
Arg
TCT
[ENA]
¡û
>W1610719894
LMAI01000004
Bacteroidota
Chryseobacterium aquaticum greenlandense [LMAI]
102771
102847
+
Arg
TCT
[ENA]
¡û
>W1610740218
LMQM01000003
Bacteroidota
Chryseobacterium sp. Leaf404 [LMQM]
99809
99883
+
Arg
TCT
[ENA]
¡û
>W1610740222
LMQM01000010
Bacteroidota
Chryseobacterium sp. Leaf404 [LMQM]
71051
71127
+
Arg
TCT
[ENA]
¡û
>W1610740287
LMQN01000012
Bacteroidota
Chryseobacterium sp. Leaf405 [LMQN]
442650
442574
-
Arg
TCT
[ENA]
¡û
>W1610740289
LMQN01000012
Bacteroidota
Chryseobacterium sp. Leaf405 [LMQN]
441914
441838
-
Arg
TCT
[ENA]
¡û
>W1610911268
LSHB01000049
Bacteroidota
Chryseobacterium sp. FP211-J200 J200 [LSHB]
14702
14626
-
Arg
TCT
[ENA]
¡û
>W1610911270
LSHB01000049
Bacteroidota
Chryseobacterium sp. FP211-J200 J200 [LSHB]
14427
14351
-
Arg
TCT
[ENA]
¡û
>W1710097877
CYUH01000012
Bacteroidota
Chryseobacterium senegalense FF12 [CYUH]
36767
36843
+
Arg
TCT
[ENA]
¡û
>W1710524990
FNJE01000002
Bacteroidota
Cloacibacterium normanense [FNJE]
387
311
-
Arg
TCT
[ENA]
¡û
>W1710540582
FNWX01000045
Bacteroidota
Epilithonimonas hominis [FNWX]
20056
20130
+
Arg
TCT
[ENA]
¡û
>W1710550515
FOFI01000003
Bacteroidota
Epilithonimonas lactis [FOFI]
128178
128102
-
Arg
TCT
[ENA]
¡û
>W1710550517
FOFI01000003
Bacteroidota
Epilithonimonas lactis [FOFI]
127908
127832
-
Arg
TCT
[ENA]
¡û
>W1710570415
FOVD01000002
Bacteroidota
Chryseobacterium oleae [FOVD]
229768
229694
-
Arg
TCT
[ENA]
¡û
>W1710582283
FPKW01000021
Bacteroidota
Chryseobacterium limigenitum [FPKW]
52223
52299
+
Arg
TCT
[ENA]
¡û
>W1710582627
FQUD01000002
Bacteroidota
Chryseobacterium sp. OV279 [FQUD]
174563
174489
-
Arg
TCT
[ENA]
¡û
>W1710583923
FQVE01000002
Bacteroidota
Chryseobacterium vrystaatense YR203 [FQVE]
512180
512106
-
Arg
TCT
[ENA]
¡û
>W1710590251
FRAV01000037
Bacteroidota
Chryseobacterium polytrichastri [FRAV]
49901
49975
+
Arg
TCT
[ENA]
¡û
>W1710590262
FRAV01000056
Bacteroidota
Chryseobacterium polytrichastri [FRAV]
20982
20906
-
Arg
TCT
[ENA]
¡û
>W1710590264
FRAV01000056
Bacteroidota
Chryseobacterium polytrichastri [FRAV]
20759
20685
-
Arg
TCT
[ENA]
¡û
>W1710592016
FRCD01000008
Bacteroidota
Chryseobacterium carnipullorum [FRCD]
207131
207057
-
Arg
TCT
[ENA]
¡û
>W1710594970
FSRQ01000001
Bacteroidota
Chryseobacterium scophthalmum [FSRQ]
1616902
1616976
+
Arg
TCT
[ENA]
¡û
>W1710594972
FSRQ01000001
Bacteroidota
Chryseobacterium scophthalmum [FSRQ]
1619081
1619155
+
Arg
TCT
[ENA]
¡û
>W1710595917
FTMF01000023
Bacteroidota
Chryseobacterium indoltheticum [FTMF]
20161
20235
+
Arg
TCT
[ENA]
¡û
>W1710595919
FTMF01000023
Bacteroidota
Chryseobacterium indoltheticum [FTMF]
22955
23029
+
Arg
TCT
[ENA]
¡û
>W1710598344
FTNY01000002
Bacteroidota
Chryseobacterium shigense [FTNY]
675113
675187
+
Arg
TCT
[ENA]
¡û
>W1710598921
FTOI01000006
Bacteroidota
Kaistella chaponensis chaponense [FTOI]
79793
79867
+
Arg
TCT
[ENA]
¡û
>W1710598972
FTOJ01000008
Bacteroidota
Chryseobacterium piscicola [FTOJ]
41042
40968
-
Arg
TCT
[ENA]
¡û
>W1710598974
FTOJ01000008
Bacteroidota
Chryseobacterium piscicola [FTOJ]
36989
36915
-
Arg
TCT
[ENA]
¡û
>W1710603583
FUZE01000005
Bacteroidota
Chryseobacterium balustinum [FUZE]
37614
37540
-
Arg
TCT
[ENA]
¡û
>W1710603585
FUZE01000005
Bacteroidota
Chryseobacterium balustinum [FUZE]
33390
33316
-
Arg
TCT
[ENA]
¡û
>W1710717834
LELA01000046
Bacteroidota
Chryseobacterium sp. BGARF1 [LELA]
92
18
-
Arg
TCT
[ENA]
¡û
>W1710718529
LFEG01000033
Bacteroidota
Chryseobacterium sp. MOF25P [LFEG]
14676
14750
+
Arg
TCT
[ENA]
¡û
>W1710768577
LIRF01000006
Bacteroidota
Chryseobacterium sp. ERMR1:04 [LIRF]
256453
256379
-
Arg
TCT
[ENA]
¡û
>W1710768579
LIRF01000006
Bacteroidota
Chryseobacterium sp. ERMR1:04 [LIRF]
253911
253835
-
Arg
TCT
[ENA]
¡û
>W1710768581
LIRF01000006
Bacteroidota
Chryseobacterium sp. ERMR1:04 [LIRF]
253687
253613
-
Arg
TCT
[ENA]
¡û
>W1710768583
LIRF01000006
Bacteroidota
Chryseobacterium sp. ERMR1:04 [LIRF]
241706
241632
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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