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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275730 (39 seq.)
>WENV180001569
FLNX01002588
[FLNX] bioreactor metagenome; Moose rumen
1
76
+
Val
TAC
[ENA]
¡û
>WENV180321345
OBKR01000018
[OBKR] human gut metagenome; feces
71541
71616
+
Val
TAC
[ENA]
¡û
>WENV182277132
OHUR01000072
[OHUR] human gut metagenome; feces
26295
26370
+
Val
TAC
[ENA]
¡û
>WENV182282896
OHVJ01000070
[OHVJ] human gut metagenome; feces
32534
32459
-
Val
TAC
[ENA]
¡û
>WENV182285148
OHVN01000080
[OHVN] human gut metagenome; feces
32480
32405
-
Val
TAC
[ENA]
¡û
>WENV182287058
OHVS01000043
[OHVS] human gut metagenome; feces
32480
32405
-
Val
TAC
[ENA]
¡û
>WENV182298116
OHWI01000099
[OHWI] human gut metagenome; feces
32480
32405
-
Val
TAC
[ENA]
¡û
>WENV182305821
OHXC01000108
[OHXC] human gut metagenome; feces
47578
47653
+
Val
TAC
[ENA]
¡û
>WENV182310361
OHXM01000499
[OHXM] human gut metagenome; feces
5555
5630
+
Val
TAC
[ENA]
¡û
>WENV182311777
OHXU01000110
[OHXU] human gut metagenome; feces
18896
18971
+
Val
TAC
[ENA]
¡û
>WENV182316910
OHYE01000063
[OHYE] human gut metagenome; feces
32480
32405
-
Val
TAC
[ENA]
¡û
>WENV182317913
OHYF01000131
[OHYF] human gut metagenome; feces
18896
18971
+
Val
TAC
[ENA]
¡û
>WENV182319687
OHYH01000241
[OHYH] human gut metagenome; feces
9170
9095
-
Val
TAC
[ENA]
¡û
>WENV182324901
OHYS01000066
[OHYS] human gut metagenome; feces
18931
19006
+
Val
TAC
[ENA]
¡û
>WENV182326731
OHYV01000102
[OHYV] human gut metagenome; feces
18896
18971
+
Val
TAC
[ENA]
¡û
>WENV182327552
OHZA01001190
[OHZA] human gut metagenome; feces
595
670
+
Val
TAC
[ENA]
¡û
>WENV182328155
OHZC01000073
[OHZC] human gut metagenome; feces
32480
32405
-
Val
TAC
[ENA]
¡û
>WENV182332676
OHZK01000130
[OHZK] human gut metagenome; feces
18896
18971
+
Val
TAC
[ENA]
¡û
>WENV182342739
OIAI01000358
[OIAI] human gut metagenome; feces
888
963
+
Val
TAC
[ENA]
¡û
>WENV182343885
OIAL01000141
[OIAL] human gut metagenome; feces
32480
32405
-
Val
TAC
[ENA]
¡û
>WENV182354006
OIBN01000125
[OIBN] human gut metagenome; feces
18896
18971
+
Val
TAC
[ENA]
¡û
>WENV182385404
OIDW01000111
[OIDW] human gut metagenome; feces
18896
18971
+
Val
TAC
[ENA]
¡û
>WENV182653740
OJMI01000590
[OJMI] human gut metagenome; feces
32704
32629
-
Val
TAC
[ENA]
¡û
>W141276439
JADU01000017
Bacteroidota
Hallella seregens ATCC 51272 [JADU]
71407
71332
-
Val
TAC
[ENA]
¡û
>W141276440
JADU01000017
Bacteroidota
Hallella seregens ATCC 51272 [JADU]
71284
71209
-
Val
TAC
[ENA]
¡û
>WENV182935701
OKVA01000583
[OKVA] human gut metagenome; feces
144
69
-
Val
TAC
[ENA]
¡û
>WENV183106961
OLNM01000268
[OLNM] human gut metagenome; faeces
37731
37656
-
Val
TAC
[ENA]
¡û
>WENV183192607
OLPS01000417
[OLPS] human gut metagenome; faeces
37731
37656
-
Val
TAC
[ENA]
¡û
>WENV183388618
OLZA01000186
[OLZA] human gut metagenome; feces
34663
34588
-
Val
TAC
[ENA]
¡û
>WENV183389530
OLZB01000083
[OLZB] human gut metagenome; feces
29173
29248
+
Val
TAC
[ENA]
¡û
>WENV183419958
OMBA01000075
[OMBA] human gut metagenome; feces
50323
50248
-
Val
TAC
[ENA]
¡û
>WENV183487592
OMFY01000043
[OMFY] human gut metagenome; feces
66431
66356
-
Val
TAC
[ENA]
¡û
>WENV170670054
LAHS01021958
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
268
193
-
Val
TAC
[ENA]
¡û
>C151004225
CP003368
Bacteroidota
Prevotella dentalis DSM 3688 [CP003368, CP003369]
1339652
1339577
-
Val
TAC
[Ensembl]
¡û
>C151004226
CP003368
Bacteroidota
Prevotella dentalis DSM 3688 [CP003368, CP003369]
1339529
1339454
-
Val
TAC
[Ensembl]
¡û
>W11170804
AFPW01000012
Bacteroidota
Prevotella dentalis DSM 3688 [AFPW]
148237
148162
-
Val
TAC
[ENA]
¡û
>W11170805
AFPW01000012
Bacteroidota
Prevotella dentalis DSM 3688 [AFPW]
148114
148039
-
Val
TAC
[ENA]
¡û
>W121017377
AGRS01000059
Bacteroidota
Prevotella dentalis DSM 3688 [AGRS]
31122
31197
+
Val
TAC
[ENA]
¡û
>W121017378
AGRS01000059
Bacteroidota
Prevotella dentalis DSM 3688 [AGRS]
31245
31320
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK