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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.27578 (64 seq.)
>W1710815537
LKKJ01000035
Gammaproteobacteria
Pseudomonas sp. TTU2014-066ASC [LKKJ]
54414
54503
+
Ser
CGA
[ENA]
¡û
>W1710815645
LKKL01000024
Gammaproteobacteria
Pseudomonas sp. TTU2014-096BSC [LKKL]
81442
81353
-
Ser
CGA
[ENA]
¡û
>W131052599
AMZB01000137
Gammaproteobacteria
Pseudomonas nitroreducens TX1 [AMZB]
150414
150325
-
Ser
CGA
[ENA]
¡û
>W1711333272
MBPN01000035
Gammaproteobacteria
Pseudomonas defluvii WCHP16 [MBPN]
13391
13302
-
Ser
CGA
[ENA]
¡û
>W1711353384
MDEM01000032
Gammaproteobacteria
Stutzerimonas xanthomarina [MDEM]
564591
564680
+
Ser
CGA
[ENA]
¡û
>W1711744412
MUHV01000010
Gammaproteobacteria
Pseudomonas sp. T [MUHV]
145078
145167
+
Ser
CGA
[ENA]
¡û
>W1712108172
NJBA01000002
Gammaproteobacteria
Pseudomonas nitroreducens [NJBA]
96559
96648
+
Ser
CGA
[ENA]
¡û
>W141273279
CCSF01000001
Gammaproteobacteria
Pseudomonas saudiphocaensis 20_BN [CCSF]
1002351
1002262
-
Ser
CGA
[ENA]
¡û
>WENV170263289
CERC01031620
[CERC] marine metagenome genome assembly TARA_070_MES_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1376
1287
-
Ser
CGA
[ENA]
¡û
>WENV170265298
CERD01126772
[CERD] marine metagenome genome assembly TARA_070_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3339
3250
-
Ser
CGA
[ENA]
¡û
>WENV170347174
CETG01109437
[CETG] marine metagenome genome assembly TARA_122_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
153
242
+
Ser
CGA
[ENA]
¡û
>WENV170356677
CETJ01057657
[CETJ] marine metagenome genome assembly TARA_122_MES_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
52281
52192
-
Ser
CGA
[ENA]
¡û
>C191044703
CP026511
Gammaproteobacteria
Pseudomonadaceae bacterium SI-3 [CP026511]
1581325
1581414
+
Ser
CGA
-
¡û
>W1810224443
POUL01000001
Gammaproteobacteria
Stutzerimonas stutzeri 4C29 [POUL]
342608
342519
-
Ser
CGA
[ENA]
¡û
>W1810722092
QNTV01000002
Gammaproteobacteria
Stutzerimonas zhaodongensis SST2 [QNTV]
118898
118809
-
Ser
CGA
[ENA]
¡û
>W2010311441
CABWMS010000006
Gammaproteobacteria
Pseudomonas sp. 9Ag [CABWMS]
15238
15149
-
Ser
CGA
[ENA]
¡û
>W2010517431
JAAMQK010000001
Gammaproteobacteria
Pseudomonas stutzeri 8A1 [JAAMQK]
413769
413858
+
Ser
CGA
[ENA]
¡û
>W2010517997
JAAMQT010000004
Gammaproteobacteria
Pseudomonas stutzeri 62A4 [JAAMQT]
213106
213017
-
Ser
CGA
[ENA]
¡û
>W2010518342
JAAMQZ010000004
Gammaproteobacteria
Pseudomonas stutzeri 95A6 [JAAMQZ]
97294
97383
+
Ser
CGA
[ENA]
¡û
>W2010518520
JAAMRC010000002
Gammaproteobacteria
Pseudomonas stutzeri 99A1 [JAAMRC]
520497
520586
+
Ser
CGA
[ENA]
¡û
>W2010529409
JAAOIQ010000001
Gammaproteobacteria
Pseudomonas fluorescens DSM 11579 [JAAOIQ]
3915292
3915203
-
Ser
CGA
[ENA]
¡û
>W2010595469
JABETN010000008
Gammaproteobacteria
Pseudomonas nitroreducens SC-1148-IPA-05 [JABETN]
43917
43828
-
Ser
CGA
[ENA]
¡û
>W2010595993
JABEVZ010000014
Gammaproteobacteria
Pseudomonas nitrititolerans AGROB37 [JABEVZ]
33190
33101
-
Ser
CGA
[ENA]
¡û
>W2011416484
RFFL01000011
Gammaproteobacteria
Pseudomonas sp. GL14 [RFFL]
101487
101576
+
Ser
CGA
[ENA]
¡û
>W2011425497
RHQQ01000020
Gammaproteobacteria
Pseudomonas sp. s199 [RHQQ]
27080
26991
-
Ser
CGA
[ENA]
¡û
>W2011425714
RHQU01000005
Gammaproteobacteria
Pseudomonas saudiphocaensis PS_399 [RHQU]
179065
178976
-
Ser
CGA
[ENA]
¡û
>W2011612973
SJSS01000003
Gammaproteobacteria
Pseudomonas sp. IC_126 [SJSS]
177714
177803
+
Ser
CGA
[ENA]
¡û
>W2011702695
SWDV01000050
Gammaproteobacteria
Pseudomonas sp. LAM1902 [SWDV]
32245
32334
+
Ser
CGA
[ENA]
¡û
>W2011838353
UGVA01000007
Gammaproteobacteria
Pseudomonas stutzeri NCTC10473 [UGVA]
2579924
2579835
-
Ser
CGA
[ENA]
¡û
>W2011962100
VASG01000005
Gammaproteobacteria
Pseudomonas nitroreducens DSM 9128 [VASG]
519456
519367
-
Ser
CGA
[ENA]
¡û
>W2012096871
VNHQ01000012
Gammaproteobacteria
Pseudomonas stutzeri NP_8Ht [VNHQ]
446770
446859
+
Ser
CGA
[ENA]
¡û
>W2110305923
JADDOO010000001
Gammaproteobacteria
Pseudomonas saudiphocaensis AGROB56 [JADDOO]
625424
625335
-
Ser
CGA
[ENA]
¡û
>W2110382803
JADUCM010000019
Gammaproteobacteria
Pseudomonas alkylphenolica PSB00016 [JADUCM]
80707
80796
+
Ser
CGA
[ENA]
¡û
>W2110394250
JADWSX010000002
Gammaproteobacteria
Pseudomonas qingdaonensis ZCR6 [JADWSX]
249672
249761
+
Ser
CGA
[ENA]
¡û
>W2110415766
JAEIKY010000038
Gammaproteobacteria
Pseudomonas corrugata Sera_3A [JAEIKY]
37888
37799
-
Ser
CGA
[ENA]
¡û
>W2110494084
JAFFPG010000001
Gammaproteobacteria
Pseudomonas nitrititolerans PAH26 [JAFFPG]
571035
571124
+
Ser
CGA
[ENA]
¡û
>W2110499057
JAFHXU010000024
Gammaproteobacteria
Pseudomonas nitrititolerans Survcare175 [JAFHXU]
26652
26563
-
Ser
CGA
[ENA]
¡û
>C211074923
CP048411
Gammaproteobacteria
Pseudomonas sp. MTM4 [CP048411]
1481529
1481440
-
Ser
CGA
-
¡û
>C211275094
CP070356
Gammaproteobacteria
Pseudomonas sp. PDNC002 [CP070356]
5780639
5780550
-
Ser
CGA
-
¡û
>C211294680
CP071706
Gammaproteobacteria
Pseudomonas donghuensis P482 [CP071706]
1549069
1549158
+
Ser
CGA
-
¡û
>C211332921
CP074676
Gammaproteobacteria
Pseudomonas qingdaonensis S-1 [CP074676]
1590518
1590607
+
Ser
CGA
-
¡û
>C211348506
CP076683
Gammaproteobacteria
Pseudomonas zhaodongensis A252 [CP076683]
4158288
4158199
-
Ser
CGA
-
¡û
>C231236660
CP087174
Gammaproteobacteria
Pseudomonas donghuensis B21-042 [CP087174]
1429320
1429409
+
Ser
CGA
-
¡û
>C231236942
CP087178
Gammaproteobacteria
Pseudomonas sp. B21-036 [CP087178]
1498365
1498454
+
Ser
CGA
-
¡û
>C231238411
CP087199
Gammaproteobacteria
Pseudomonas sp. B21-009 [CP087199]
1423008
1423097
+
Ser
CGA
-
¡û
>C231328243
CP093164
Gammaproteobacteria
[Pseudomonas] zhaodongensis LQ01-5 [CP093164]
1681108
1681197
+
Ser
CGA
-
¡û
>C231547192
CP113226
Gammaproteobacteria
Pseudomonadaceae bacterium T75 [CP113226]
33399
33488
+
Ser
CGA
-
¡û
>C241022576
CP019396
Gammaproteobacteria
Pseudomonas sp. R32 [CP019396]
1405224
1405313
+
Ser
CGA
-
¡û
>W2110782123
WIGA01000008
Gammaproteobacteria
Pseudomonas stutzeri KOL14.W.20.3 [WIGA]
849362
849451
+
Ser
CGA
[ENA]
¡û
>C241081640
CP043626
Gammaproteobacteria
Pseudomonas denitrificans (nom. rej.) BG1 [CP043626]
3525906
3525817
-
Ser
CGA
-
¡û
>W2110782192
WIGB01000006
Gammaproteobacteria
Pseudomonas stutzeri KOL14.W.20.2 [WIGB]
846782
846871
+
Ser
CGA
[ENA]
¡û
>W2110782528
WIGK01000007
Gammaproteobacteria
Pseudomonas xanthomarina KOL14.W.430.4 [WIGK]
435571
435660
+
Ser
CGA
[ENA]
¡û
>C241131912
CP048833
Gammaproteobacteria
Pseudomonas multiresinivorans populi [CP048833]
2255135
2255224
+
Ser
CGA
-
¡û
>C241289385
CP129532
Gammaproteobacteria
Pseudomonas donghuensis SVBP6 [CP129532]
1391877
1391966
+
Ser
CGA
-
¡û
>C241370346
CP142104
Gammaproteobacteria
Pseudomonas frederiksbergensis YE17 [CP142104]
4403248
4403159
-
Ser
CGA
-
¡û
>W1511489999
JWTL01000004
Gammaproteobacteria
Pseudomonas sp. 10B238 [JWTL]
133569
133480
-
Ser
CGA
[ENA]
¡û
>W1511534496
JYOA01000004
Gammaproteobacteria
Pseudomonas sp. 21 [JYOA]
86187
86098
-
Ser
CGA
[ENA]
¡û
>C121015341
CP003725
Gammaproteobacteria
Stutzerimonas stutzeri DSM 10701 [CP003725]
1587083
1587172
+
Ser
CGA
[Ensembl]
¡û
>C161000958
AP014655
Gammaproteobacteria
Pseudomonas sp. MT-1 [AP014655]
3522389
3522300
-
Ser
CGA
-
¡û
>C161089987
CP015641
Gammaproteobacteria
Stutzerimonas stutzeri 273 [CP015641]
3522932
3523021
+
Ser
CGA
[Ensembl]
¡û
>W121018246
AGSX01000188
Gammaproteobacteria
Stutzerimonas stutzeri SDM-LAC [AGSX]
1022
1111
+
Ser
CGA
[ENA]
¡û
>W1610679634
LKKJ01000035
Gammaproteobacteria
Pseudomonas sp. TTU2014-066ASC [LKKJ]
54414
54503
+
Ser
CGA
[ENA]
¡û
>W1610679742
LKKL01000024
Gammaproteobacteria
Pseudomonas sp. TTU2014-096BSC [LKKL]
81442
81353
-
Ser
CGA
[ENA]
¡û
>W1710586229
FQXA01000003
Gammaproteobacteria
Stutzerimonas xanthomarina DSM 18231 [FQXA]
258719
258630
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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