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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275791 (21 seq.)
>WENV180013219
FMSI01056973
[FMSI] soil metagenome; Soil
79
2
-
Asp
GTC
[ENA]
¡û
>WENV180014106
FPIC01056619
[FPIC] soil metagenome; Soil
9854
9777
-
Asp
GTC
[ENA]
¡û
>WENV180014497
FQKF010027345
[FQKF] soil metagenome; Soil
75
152
+
Asp
GTC
[ENA]
¡û
>WENV180036433
FVAA010092761
[FVAA] soil metagenome; Soil
59
136
+
Asp
GTC
[ENA]
¡û
>WENV181407872
OGCH01000158
[OGCH] hot springs metagenome; hot springs
21185
21108
-
Asp
GTC
[ENA]
¡û
>WENV181410557
OGCI01003916
[OGCI] hot springs metagenome; Hot spring water
7607
7530
-
Asp
GTC
[ENA]
¡û
>WENV170000712
AFSR01002275
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
8025
7948
-
Asp
GTC
[ENA]
¡û
>WENV170573786
FLYL01030647
[FLYL] hot springs metagenome; Sediment
252
329
+
Asp
GTC
[ENA]
¡û
>WENV11101055
AFSR01002275
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
8025
7948
-
Asp
GTC
[ENA]
¡û
>W1610163324
FAOQ01000047
Armatimonadota
Armatimonadetes bacterium GBS [FAOQ]
2813
2890
+
Asp
GTC
[ENA]
¡û
>W1610163498
FAOT01000036
Armatimonadota
Armatimonadetes bacterium GXS [FAOT]
50654
50731
+
Asp
GTC
[ENA]
¡û
>W1610163517
FAOU01000006
Armatimonadota
Armatimonadetes bacterium DC [FAOU]
61522
61445
-
Asp
GTC
[ENA]
¡û
>W1610594605
LDXZ01000047
Armatimonadota
Armatimonadetes bacterium GBS [LDXZ]
2813
2890
+
Asp
GTC
[ENA]
¡û
>W1610594665
LDYA01000036
Armatimonadota
Armatimonadetes bacterium GXS [LDYA]
50654
50731
+
Asp
GTC
[ENA]
¡û
>W1610594684
LDYB01000006
Armatimonadota
Armatimonadetes bacterium DC [LDYB]
61522
61445
-
Asp
GTC
[ENA]
¡û
>W1710164991
FAOQ01000047
Armatimonadota
Armatimonadetes bacterium GBS [FAOQ]
2813
2890
+
Asp
GTC
[ENA]
¡û
>W1710165165
FAOT01000036
Armatimonadota
Armatimonadetes bacterium GXS [FAOT]
50654
50731
+
Asp
GTC
[ENA]
¡û
>W1710165184
FAOU01000006
Armatimonadota
Armatimonadetes bacterium DC [FAOU]
61522
61445
-
Asp
GTC
[ENA]
¡û
>W1710714057
LDXZ01000047
Armatimonadota
Armatimonadetes bacterium GBS [LDXZ]
2813
2890
+
Asp
GTC
[ENA]
¡û
>W1710714117
LDYA01000036
Armatimonadota
Armatimonadetes bacterium GXS [LDYA]
50654
50731
+
Asp
GTC
[ENA]
¡û
>W1710714136
LDYB01000006
Armatimonadota
Armatimonadetes bacterium DC [LDYB]
61522
61445
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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