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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275792 (5 seq.)
>WENV181408178
OGCH01000891
[OGCH] hot springs metagenome; hot springs
6387
6310
-
Pro
TGG
[ENA]
¡û
>W1610163338
FAOQ01000091
Armatimonadota
Armatimonadetes bacterium GBS [FAOQ]
6663
6740
+
Pro
TGG
[ENA]
¡û
>W1610594619
LDXZ01000091
Armatimonadota
Armatimonadetes bacterium GBS [LDXZ]
6663
6740
+
Pro
TGG
[ENA]
¡û
>W1710165005
FAOQ01000091
Armatimonadota
Armatimonadetes bacterium GBS [FAOQ]
6663
6740
+
Pro
TGG
[ENA]
¡û
>W1710714071
LDXZ01000091
Armatimonadota
Armatimonadetes bacterium GBS [LDXZ]
6663
6740
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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