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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.27583 (31 seq.)
>W1710785524
LJHY01000002
Alphaproteobacteria
Novosphingobium sp. AAP83 [LJHY]
13741
13652
-
Ser
CGA
[ENA]
¡û
>W1710785574
LJHZ01000019
Alphaproteobacteria
Novosphingobium sp. AAP93 [LJHZ]
62523
62612
+
Ser
CGA
[ENA]
¡û
>W1710856903
LLZS01000007
Alphaproteobacteria
Novosphingobium fuchskuhlense [LLZS]
296706
296795
+
Ser
CGA
[ENA]
¡û
>W131160104
AQWH01000050
Alphaproteobacteria
Martelella mediterranea DSM 17316 [AQWH]
24260
24171
-
Ser
CGA
[ENA]
¡û
>W131160108
AQWH01000057
Alphaproteobacteria
Martelella mediterranea DSM 17316 [AQWH]
14382
14471
+
Ser
CGA
[ENA]
¡û
>W131160109
AQWH01000058
Alphaproteobacteria
Martelella mediterranea DSM 17316 [AQWH]
14215
14126
-
Ser
CGA
[ENA]
¡û
>W1711505616
MKVS01000004
Alphaproteobacteria
Novosphingobium sp. 63-713 [MKVS]
167570
167659
+
Ser
CGA
[ENA]
¡û
>C171105003
CP020330
Alphaproteobacteria
Martelella mediterranea DSM 17316 MACL11 [CP020330]
1909384
1909473
+
Ser
CGA
-
¡û
>C171105004
CP020330
Alphaproteobacteria
Martelella mediterranea DSM 17316 MACL11 [CP020330]
1923546
1923635
+
Ser
CGA
-
¡û
>WENV181222893
OFDC01000546
[OFDC] hot springs metagenome; Water
1876
1965
+
Ser
CGA
[ENA]
¡û
>WENV170176747
CEOS01119514
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1626
1537
-
Ser
CGA
[ENA]
¡û
>WENV170228666
CEQG01029887
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
13936
13847
-
Ser
CGA
[ENA]
¡û
>WENV170500181
CEVT01375624
[CEVT] marine metagenome genome assembly TARA_150_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
799
710
-
Ser
CGA
[ENA]
¡û
>WENV170787193
MDSV01014778
[MDSV] marine metagenome; seawater
9667
9756
+
Ser
CGA
[ENA]
¡û
>WENV170828607
MDSY01152789
[MDSY] marine metagenome; seawater
285
374
+
Ser
CGA
[ENA]
¡û
>W1910231953
FPEH01000015
Alphaproteobacteria
Novosphingobium sp. NDB2Meth1 [FPEH]
212045
212134
+
Ser
CGA
[ENA]
¡û
>W2010385496
FPEH01000015
Alphaproteobacteria
Novosphingobium sp. NDB2Meth1 [FPEH]
212045
212134
+
Ser
CGA
[ENA]
¡û
>W2010570133
JAATVV010000003
Alphaproteobacteria
Martelella sp. HB161492 [JAATVV]
179873
179962
+
Ser
CGA
[ENA]
¡û
>W2010636413
JABUOU010000006
Alphaproteobacteria
Martelella limonii NBRC 109441 [JABUOU]
89801
89890
+
Ser
CGA
[ENA]
¡û
>W2010713030
JACHOV010000009
Alphaproteobacteria
Rhizorhapis suberifaciens DSM 7465 [JACHOV]
121091
121180
+
Ser
CGA
[ENA]
¡û
>W2010723890
JACICY010000004
Alphaproteobacteria
Novosphingobium hassiacum DSM 14552 [JACICY]
53156
53067
-
Ser
CGA
[ENA]
¡û
>W2010732100
JACIJP010000002
Alphaproteobacteria
Sphingobium subterraneum DSM 102255 [JACIJP]
675897
675808
-
Ser
CGA
[ENA]
¡û
>W2012031651
VHLG01000003
Alphaproteobacteria
Martelella sp. BGMRC2036 [VHLG]
76615
76704
+
Ser
CGA
[ENA]
¡û
>W2110029020
BMKL01000001
Alphaproteobacteria
Altererythrobacter deserti CGMCC 1.15959 [BMKL]
2093262
2093173
-
Ser
CGA
[ENA]
¡û
>W2110293620
JACZCS010000001
Alphaproteobacteria
Oricola sp. NBU1457 [JACZCS]
471961
472050
+
Ser
CGA
[ENA]
¡û
>C241105721
CP046120
Alphaproteobacteria
Novosphingobium sp. Gsoil 351 [CP046120]
1674022
1673933
-
Ser
CGA
-
¡û
>C241169430
CP054858
Alphaproteobacteria
Martelella sp. NC18 [CP054858]
4208076
4207987
-
Ser
CGA
-
¡û
>C241169455
CP054861
Alphaproteobacteria
Martelella sp. NC20 [CP054861]
2220635
2220724
+
Ser
CGA
-
¡û
>W1610649330
LJHY01000002
Alphaproteobacteria
Novosphingobium sp. AAP83 [LJHY]
13741
13652
-
Ser
CGA
[ENA]
¡û
>W1610649380
LJHZ01000019
Alphaproteobacteria
Novosphingobium sp. AAP93 [LJHZ]
62523
62612
+
Ser
CGA
[ENA]
¡û
>W1610719284
LLZS01000007
Alphaproteobacteria
Novosphingobium fuchskuhlense [LLZS]
296706
296795
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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