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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275915 (59 seq.)
>W1711019263
LQXO02000026
Gammaproteobacteria
Vibrio barjaei [LQXO]
114514
114438
-
Pro
GGG
[ENA]
¡û
>W1711233222
LYBT01000058
Gammaproteobacteria
Photobacterium damselae subsp. damselae [LYBT]
28764
28688
-
Pro
GGG
[ENA]
¡û
>C171108072
CP020453
Gammaproteobacteria
Vibrio coralliilyticus SNUTY-1 [CP020453, CP020454]
2568623
2568699
+
Pro
GGG
-
¡û
>W131240090
BAOB01000151
Gammaproteobacteria
Vibrio azureus NBRC 104587 [BAOB]
280
356
+
Pro
GGG
[ENA]
¡û
>W131240673
BAOJ01000066
Gammaproteobacteria
Vibrio sagamiensis NBRC 104589 [BAOJ]
26848
26772
-
Pro
GGG
[ENA]
¡û
>w027577
ABCH01000004
Gammaproteobacteria
Vibrio mediterranei AK1 [ABCH]
201874
201796
-
Pro
GGG
[ENA]
¡û
>W141070938
ASHJ01000267
Gammaproteobacteria
Vibrio mediterranei A203 [ASHJ]
4858
4782
-
Pro
GGG
[ENA]
¡û
>W141105395
AVOO01000001
Gammaproteobacteria
Vibrio coralliilyticus OCN008 [AVOO]
31751
31675
-
Pro
GGG
[ENA]
¡û
>W141230939
BATL01000088
Gammaproteobacteria
Vibrio azureus NBRC 104587 [BATL]
22208
22132
-
Pro
GGG
[ENA]
¡û
>W141238983
BBMR01000005
Gammaproteobacteria
Vibrio maritimus [BBMR]
193249
193173
-
Pro
GGG
[ENA]
¡û
>W141239051
BBMS01000026
Gammaproteobacteria
Vibrio variabilis [BBMS]
61264
61188
-
Pro
GGG
[ENA]
¡û
>WENV170454699
CEVA01054378
[CEVA] marine metagenome genome assembly TARA_125_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1419
1343
-
Pro
GGG
[ENA]
¢þ
>WENV170658089
JTFP01053786
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
323
247
-
Pro
GGG
[ENA]
¢þ
>C181031137
CP018298
Gammaproteobacteria
Photobacterium damselae Phdp Wu-1 [CP018297, CP018298]
5558
5482
-
Pro
GGG
-
¡û
>C181201276
CP031472
Gammaproteobacteria
Vibrio coralliilyticus RE22 [CP031472, CP031473]
1584407
1584483
+
Pro
GGG
-
¡û
>W09118338
ACCV01000102
Gammaproteobacteria
Vibrio sp. 16 16 [ACCV]
7579
7655
+
Pro
GGG
[ENA]
¡û
>W141805081
JPJA01000092
Gammaproteobacteria
Vibrio sp. ER1A [JPJA]
601397
601321
-
Pro
GGG
[ENA]
¡û
>W141808467
JPQB01000002
Gammaproteobacteria
Vibrio sp. B183 [JPQB]
225379
225455
+
Pro
GGG
[ENA]
¡û
>W1910004261
AUTV01000001
Gammaproteobacteria
Vibrio coralliilyticus NA0301 [AUTV]
751384
751460
+
Pro
GGG
[ENA]
¡û
>W1910585316
JYJL01000104
Gammaproteobacteria
Vibrio mediterranei CAIM 316 [JYJL]
7549
7473
-
Pro
GGG
[ENA]
¡û
>W1910617794
LIXE01000008
Gammaproteobacteria
Vibrio sp. PID23_8 [LIXE]
56442
56366
-
Pro
GGG
[ENA]
¡û
>W1910617899
LIXM01000021
Gammaproteobacteria
Vibrio sp. PID17_43 [LIXM]
39310
39386
+
Pro
GGG
[ENA]
¡û
>W1910618772
LJJE01000070
Gammaproteobacteria
Vibrio sonorensis CAIM 1076 [LJJE]
71045
70969
-
Pro
GGG
[ENA]
¡û
>W1910664304
MBTQ01000093
Gammaproteobacteria
Photobacterium damselae Hep-2a-11 [MBTQ]
9204
9280
+
Pro
GGG
[ENA]
¡û
>W1911203998
NRHV01000003
Gammaproteobacteria
Vibrio coralliilyticus 080116A [NRHV]
255929
256005
+
Pro
GGG
[ENA]
¡û
>W1911204180
NRHY01000002
Gammaproteobacteria
Vibrio coralliilyticus RE87 [NRHY]
725329
725405
+
Pro
GGG
[ENA]
¡û
>W1911218238
NRQO01000008
Gammaproteobacteria
Vibrio coralliilyticus AIC-7 [NRQO]
181590
181666
+
Pro
GGG
[ENA]
¡û
>W1911410268
NWTN01000004
Gammaproteobacteria
Vibrio mediterranei 17LN0615E [NWTN]
369027
369103
+
Pro
GGG
[ENA]
¡û
>W1911410349
NWTO01000004
Gammaproteobacteria
Vibrio mediterranei 21LN0615E [NWTO]
263877
263953
+
Pro
GGG
[ENA]
¡û
>W1911490850
OANU01000029
Gammaproteobacteria
Vibrio thalassae CECT8203 [OANU]
15236
15160
-
Pro
GGG
[ENA]
¡û
>W1810226186
POWH01000596
Gammaproteobacteria
Vibrio agarivorans CAIM 1911 [POWH]
148
224
+
Pro
GGG
[ENA]
¡û
>W1810366976
PVXF01000027
Gammaproteobacteria
Photobacterium damselae subsp. damselae 940804-1/1 [PVXF]
15254
15330
+
Pro
GGG
[ENA]
¡û
>W1810367143
PVXI01000178
Gammaproteobacteria
Photobacterium damselae subsp. damselae 206317-1 [PVXI]
24174
24098
-
Pro
GGG
[ENA]
¡û
>W1810425654
PYVE01000033
Gammaproteobacteria
Vibrio mediterranei V7A [PYVE]
54345
54269
-
Pro
GGG
[ENA]
¡û
>C151046972
CP009264
Gammaproteobacteria
Vibrio coralliilyticus OCN014 [CP009264, CP009265]
789684
789608
-
Pro
GGG
[Ensembl]
¡û
>C151055901
CP009617
Gammaproteobacteria
Vibrio coralliilyticus RE98 [CP009617, CP009618]
2275658
2275734
+
Pro
GGG
[Ensembl]
¡û
>W10107513
ACZN01000018
Gammaproteobacteria
Vibrio coralliilyticus ATCC BAA-450 [ACZN]
969131
969207
+
Pro
GGG
[ENA]
¡û
>W11109900
ACZN01000018
Gammaproteobacteria
Vibrio coralliilyticus ATCC BAA-450 [ACZN]
969131
969207
+
Pro
GGG
[ENA]
¡û
>W1511357581
JRWM01000006
Gammaproteobacteria
Vibrio variabilis T01 [JRWM]
87717
87641
-
Pro
GGG
[ENA]
¡û
>W1511357802
JRWP01000028
Gammaproteobacteria
Vibrio sinaloensis T08 [JRWP]
117613
117689
+
Pro
GGG
[ENA]
¡û
>W1511357867
JRWQ01000011
Gammaproteobacteria
Vibrio tubiashii T33 [JRWQ]
96167
96091
-
Pro
GGG
[ENA]
¡û
>W1511357916
JRWR01000001
Gammaproteobacteria
Vibrio caribbeanicus T14 [JRWR]
77149
77073
-
Pro
GGG
[ENA]
¡û
>W1511483364
JWLU01000008
Gammaproteobacteria
Vibrio sinaloensis AD032 [JWLU]
73048
73124
+
Pro
GGG
[ENA]
¡û
>W1511483445
JWLV01000010
Gammaproteobacteria
Vibrio sinaloensis AD048 [JWLV]
77016
76940
-
Pro
GGG
[ENA]
¡û
>W1511500863
JXBJ01000029
Gammaproteobacteria
Vibrio sinaloensis T47 [JXBJ]
76808
76732
-
Pro
GGG
[ENA]
¡û
>W1511517778
JXXR01000001
Gammaproteobacteria
Vibrio coralliilyticus S2052 [JXXR]
814595
814671
+
Pro
GGG
[ENA]
¡û
>W1511517860
JXXS01000011
Gammaproteobacteria
Vibrio coralliilyticus S2043 [JXXS]
236955
237031
+
Pro
GGG
[ENA]
¡û
>W11144323
AEQS01000056
Gammaproteobacteria
Vibrio coralliilyticus P1 [AEQS]
19414
19490
+
Pro
GGG
[ENA]
¡û
>W11150476
AEVS01000006
Gammaproteobacteria
Vibrio brasiliensis LMG 20546 [AEVS]
14110
14186
+
Pro
GGG
[ENA]
¡û
>W11150553
AEVT01000074
Gammaproteobacteria
Vibrio sinaloensis DSM 21326 [AEVT]
43045
42969
-
Pro
GGG
[ENA]
¡û
>C161098928
CP016556
Gammaproteobacteria
Vibrio coralliilyticus 58 [CP016556, CP016557]
3030538
3030462
-
Pro
GGG
[Ensembl]
¡û
>W1610071586
BCUE01000004
Gammaproteobacteria
Vibrio mediterranei NBRC 15635 [BCUE]
33022
33098
+
Pro
GGG
[ENA]
¡û
>W1610502579
FLLQ01000002
Gammaproteobacteria
Vibrio mediterranei [FLLQ]
483922
483998
+
Pro
GGG
[ENA]
¡û
>W1610616327
LGLS01000001
Gammaproteobacteria
Vibrio coralliilyticus [LGLS]
964175
964251
+
Pro
GGG
[ENA]
¡û
>W1610867465
LQXO01000083
Gammaproteobacteria
Vibrio barjaei [LQXO]
114539
114463
-
Pro
GGG
[ENA]
¡û
>W1710068819
BCUE01000004
Gammaproteobacteria
Vibrio mediterranei NBRC 15635 [BCUE]
33022
33098
+
Pro
GGG
[ENA]
¡û
>W1710495978
FLLQ01000002
Gammaproteobacteria
Vibrio mediterranei [FLLQ]
483922
483998
+
Pro
GGG
[ENA]
¡û
>W1710539313
FNVG01000011
Gammaproteobacteria
Vibrio hangzhouensis [FNVG]
22147
22223
+
Pro
GGG
[ENA]
¡û
>W1710737573
LGLS01000001
Gammaproteobacteria
Vibrio coralliilyticus [LGLS]
964175
964251
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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