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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275921 (67 seq.)
>W1710864875
LMGF01000005
Alphaproteobacteria
Sphingopyxis sp. Root1497 [LMGF]
439368
439444
+
His
GTG
[ENA]
¡û
>W1710865016
LMGI01000002
Alphaproteobacteria
Sphingopyxis sp. Root154 [LMGI]
366781
366705
-
His
GTG
[ENA]
¡û
>W1710867426
LMIG01000004
Alphaproteobacteria
Sphingopyxis sp. Root214 [LMIG]
366747
366671
-
His
GTG
[ENA]
¡û
>W1710912498
LNRR01000001
Alphaproteobacteria
Sphingopyxis sp. H005 [LNRR]
253359
253435
+
His
GTG
[ENA]
¡û
>W1710912546
LNRS01000001
Alphaproteobacteria
Sphingopyxis sp. H012 [LNRS]
497375
497299
-
His
GTG
[ENA]
¡û
>W1710912592
LNRT01000001
Alphaproteobacteria
Sphingopyxis sp. H038 [LNRT]
497375
497299
-
His
GTG
[ENA]
¡û
>W1710912635
LNRU01000001
Alphaproteobacteria
Sphingopyxis sp. H053 [LNRU]
253443
253519
+
His
GTG
[ENA]
¡û
>W1710912708
LNRV01000014
Alphaproteobacteria
Sphingopyxis sp. H077 [LNRV]
106076
106152
+
His
GTG
[ENA]
¡û
>W1710912725
LNRW01000001
Alphaproteobacteria
Sphingopyxis sp. H080 [LNRW]
246851
246927
+
His
GTG
[ENA]
¡û
>W1710912770
LNRX01000001
Alphaproteobacteria
Sphingopyxis sp. H085 [LNRX]
253356
253432
+
His
GTG
[ENA]
¡û
>W1710912833
LNRY01000006
Alphaproteobacteria
Sphingopyxis sp. H093 [LNRY]
153162
153238
+
His
GTG
[ENA]
¡û
>W1710912886
LNRZ01000005
Alphaproteobacteria
Sphingopyxis sp. H050 [LNRZ]
366469
366545
+
His
GTG
[ENA]
¡û
>W1710912917
LNSA01000003
Alphaproteobacteria
Sphingopyxis sp. H115 [LNSA]
188490
188414
-
His
GTG
[ENA]
¡û
>W1710912973
LNSB01000022
Alphaproteobacteria
Sphingopyxis sp. HIX [LNSB]
60110
60034
-
His
GTG
[ENA]
¡û
>W1710913010
LNSC01000015
Alphaproteobacteria
Sphingopyxis sp. HXXIV [LNSC]
19515
19591
+
His
GTG
[ENA]
¡û
>W1710913063
LNSD01000006
Alphaproteobacteria
Sphingopyxis sp. H057 [LNSD]
198724
198648
-
His
GTG
[ENA]
¡û
>W1710913096
LNSE01000003
Alphaproteobacteria
Sphingopyxis sp. H067 [LNSE]
429750
429674
-
His
GTG
[ENA]
¡û
>W1710913142
LNSF01000003
Alphaproteobacteria
Sphingopyxis sp. H071 [LNSF]
492211
492135
-
His
GTG
[ENA]
¡û
>W1710913187
LNSG01000003
Alphaproteobacteria
Sphingopyxis sp. H073 [LNSG]
492211
492135
-
His
GTG
[ENA]
¡û
>W1710913262
LNSH01000034
Alphaproteobacteria
Sphingopyxis sp. H081 [LNSH]
23553
23477
-
His
GTG
[ENA]
¡û
>W1710913274
LNSI01000002
Alphaproteobacteria
Sphingopyxis sp. H100 [LNSI]
429753
429677
-
His
GTG
[ENA]
¡û
>W1710913321
LNSJ01000003
Alphaproteobacteria
Sphingopyxis sp. H107 [LNSJ]
289465
289389
-
His
GTG
[ENA]
¡û
>W1711259795
LYVN01000138
Alphaproteobacteria
Sphingopyxis sp. KK2 [LYVN]
4389
4465
+
His
GTG
[ENA]
¡û
>W1712105793
NISJ01000014
Alphaproteobacteria
Sphingopyxis witflariensis [NISJ]
79266
79190
-
His
GTG
[ENA]
¡û
>C171094545
CP019449
Alphaproteobacteria
Sphingopyxis sp. QXT-31 [CP019449]
261249
261325
+
His
GTG
-
¡û
>WENV180101301
OAOU01021528
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
383
307
-
His
GTG
[ENA]
¢þ
>ENV08000217
ABLY01029963
viral fraction from Arctic Ocean
83
7
-
His
GTG
[ENA]
¡û
>ENV08000227
ABLY01052187
viral fraction from Arctic Ocean
109
33
-
His
GTG
[ENA]
¡û
>ENV08000240
ABLY01075526
viral fraction from Arctic Ocean
108
32
-
His
GTG
[ENA]
¡û
>WENV183744317
PJUK01006850
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
232
308
+
His
GTG
[ENA]
¢þ
>C191000340
AP017603
Alphaproteobacteria
Sphingopyxis sp. EG6 [AP017603]
960641
960717
+
His
GTG
-
¡û
>C191163813
CP039250
Alphaproteobacteria
Sphingopyxis sp. PAMC25046 [CP039250]
2812403
2812327
-
His
GTG
-
¡û
>W1910744331
MIAL01000011
Alphaproteobacteria
Sphingopyxis sp. RIFCSPHIGHO2_01_FULL_65_24 [MIAL]
122485
122409
-
His
GTG
[ENA]
¡û
>W1910744410
MIAM01000064
Alphaproteobacteria
Sphingopyxis sp. RIFCSPHIGHO2_12_FULL_65_19 [MIAM]
50608
50532
-
His
GTG
[ENA]
¡û
>SRA1000166
SRR001036.218364
Marine Viruses from Arctic Ocean (SRP000129)
108
32
-
His
GTG
[SRA]
>SRA1000240
SRR001037.239803
Marine Viruses from Arctic Ocean (SRP000129)
109
33
-
His
GTG
[SRA]
>SRA1000245
SRR001037.255303
Marine Viruses from Arctic Ocean (SRP000129)
83
7
-
His
GTG
[SRA]
>W1810107966
PHFW01000002
Alphaproteobacteria
Sphingopyxis lindanitolerans WS5A3p [PHFW]
728261
728185
-
His
GTG
[ENA]
¡û
>C151044397
CP009122
Alphaproteobacteria
Sphingopyxis fribergensis Kp5.2 [CP009122]
2633044
2632968
-
His
GTG
[Ensembl]
¡û
>W1510015773
BBRO01000001
Alphaproteobacteria
Sphingopyxis sp. C-1 [BBRO]
1322587
1322663
+
His
GTG
[ENA]
¡û
>W1511221227
JNFD01000047
Alphaproteobacteria
Sphingopyxis sp. LC81 [JNFD]
120684
120760
+
His
GTG
[ENA]
¡û
>C161021413
CP009429
Alphaproteobacteria
Sphingopyxis macrogoltabida 203 [CP009429]
2508521
2508445
-
His
GTG
[Ensembl]
¡û
>C161043672
CP012700
Alphaproteobacteria
Sphingopyxis macrogoltabida EY-1 [CP012700]
2444362
2444286
-
His
GTG
[Ensembl]
¡û
>C161055647
CP013344
Alphaproteobacteria
Sphingopyxis macrogoltabida 203N [CP013344]
1488472
1488548
+
His
GTG
-
¡û
>W1610727221
LMGF01000005
Alphaproteobacteria
Sphingopyxis sp. Root1497 [LMGF]
439368
439444
+
His
GTG
[ENA]
¡û
>W1610727362
LMGI01000002
Alphaproteobacteria
Sphingopyxis sp. Root154 [LMGI]
366781
366705
-
His
GTG
[ENA]
¡û
>W1610729772
LMIG01000004
Alphaproteobacteria
Sphingopyxis sp. Root214 [LMIG]
366747
366671
-
His
GTG
[ENA]
¡û
>W1610770857
LNRR01000001
Alphaproteobacteria
Sphingopyxis sp. H005 [LNRR]
253359
253435
+
His
GTG
[ENA]
¡û
>W1610770905
LNRS01000001
Alphaproteobacteria
Sphingopyxis sp. H012 [LNRS]
497375
497299
-
His
GTG
[ENA]
¡û
>W1610770951
LNRT01000001
Alphaproteobacteria
Sphingopyxis sp. H038 [LNRT]
497375
497299
-
His
GTG
[ENA]
¡û
>W1610770994
LNRU01000001
Alphaproteobacteria
Sphingopyxis sp. H053 [LNRU]
253443
253519
+
His
GTG
[ENA]
¡û
>W1610771067
LNRV01000014
Alphaproteobacteria
Sphingopyxis sp. H077 [LNRV]
106076
106152
+
His
GTG
[ENA]
¡û
>W1610771084
LNRW01000001
Alphaproteobacteria
Sphingopyxis sp. H080 [LNRW]
246851
246927
+
His
GTG
[ENA]
¡û
>W1610771129
LNRX01000001
Alphaproteobacteria
Sphingopyxis sp. H085 [LNRX]
253356
253432
+
His
GTG
[ENA]
¡û
>W1610771192
LNRY01000006
Alphaproteobacteria
Sphingopyxis sp. H093 [LNRY]
153162
153238
+
His
GTG
[ENA]
¡û
>W1610771245
LNRZ01000005
Alphaproteobacteria
Sphingopyxis sp. H050 [LNRZ]
366469
366545
+
His
GTG
[ENA]
¡û
>W1610771276
LNSA01000003
Alphaproteobacteria
Sphingopyxis sp. H115 [LNSA]
188490
188414
-
His
GTG
[ENA]
¡û
>W1610771332
LNSB01000022
Alphaproteobacteria
Sphingopyxis sp. HIX [LNSB]
60110
60034
-
His
GTG
[ENA]
¡û
>W1610771369
LNSC01000015
Alphaproteobacteria
Sphingopyxis sp. HXXIV [LNSC]
19515
19591
+
His
GTG
[ENA]
¡û
>W1610771422
LNSD01000006
Alphaproteobacteria
Sphingopyxis sp. H057 [LNSD]
198724
198648
-
His
GTG
[ENA]
¡û
>W1610771455
LNSE01000003
Alphaproteobacteria
Sphingopyxis sp. H067 [LNSE]
429750
429674
-
His
GTG
[ENA]
¡û
>W1610771501
LNSF01000003
Alphaproteobacteria
Sphingopyxis sp. H071 [LNSF]
492211
492135
-
His
GTG
[ENA]
¡û
>W1610771546
LNSG01000003
Alphaproteobacteria
Sphingopyxis sp. H073 [LNSG]
492211
492135
-
His
GTG
[ENA]
¡û
>W1610771621
LNSH01000034
Alphaproteobacteria
Sphingopyxis sp. H081 [LNSH]
23553
23477
-
His
GTG
[ENA]
¡û
>W1610771633
LNSI01000002
Alphaproteobacteria
Sphingopyxis sp. H100 [LNSI]
429753
429677
-
His
GTG
[ENA]
¡û
>W1610771680
LNSJ01000003
Alphaproteobacteria
Sphingopyxis sp. H107 [LNSJ]
289465
289389
-
His
GTG
[ENA]
¡û
>W1710540042
FNWK01000001
Alphaproteobacteria
Sphingopyxis sp. YR583 [FNWK]
84268
84192
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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