This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275936 (95 seq.)
>W1710786962
LJJF01000001
Actinomycetota
Streptomyces sp. MJM8645 [LJJF]
3259381
3259303
-
Ala
CGC
[ENA]
¡û
>W1710860255
LMCT01000001
Actinomycetota
Kitasatospora sp. Root107 [LMCT]
497385
497309
-
Ala
CGC
[ENA]
¡û
>W1710866968
LMHX01000023
Actinomycetota
Kitasatospora sp. Root187 [LMHX]
266441
266517
+
Ala
CGC
[ENA]
¡û
>W1711183416
LWLA01000014
Actinomycetota
Streptomyces sp. CB03911 [LWLA]
80122
80044
-
Ala
CGC
[ENA]
¡û
>W1711627074
MPLE01000004
Actinomycetota
Streptomyces viridifaciens [MPLE]
2989797
2989719
-
Ala
CGC
[ENA]
¡û
>W1711903187
MZMV01000125
Actinomycetota
Micromonospora wenchangensis [MZMV]
5585
5509
-
Ala
CGC
[ENA]
¡û
>W131053461
ANAC01000003
Actinomycetota
Nocardiopsis alba DSM 43377 [ANAC]
23741
23817
+
Ala
CGC
[ENA]
¡û
>C171109536
CP020567
Actinomycetota
Kitasatospora aureofaciens DM-1 [CP020567]
2051536
2051458
-
Ala
CGC
-
¡û
>WENV180016659
FSVS01000307
[FSVS] metagenome; soil
76
153
+
Ala
CGC
[ENA]
¢þ
>WENV180023372
FTHV01001893
[FTHV] metagenome; soil
1307
1229
-
Ala
CGC
[ENA]
¢þ
>WENV180023505
FTHY01002384
[FTHY] metagenome; soil
1307
1229
-
Ala
CGC
[ENA]
¢þ
>WENV180024733
FTIJ01001680
[FTIJ] metagenome; soil
240
318
+
Ala
CGC
[ENA]
¢þ
>WENV180028622
FTJE01212496
[FTJE] metagenome; soil
537
461
-
Ala
CGC
[ENA]
¢þ
>WENV180033272
FTKF01223581
[FTKF] metagenome; soil
223
145
-
Ala
CGC
[ENA]
¢þ
>WENV180033586
FTKL01000217
[FTKL] metagenome; soil
535
613
+
Ala
CGC
[ENA]
¢þ
>WENV180033648
FTKL01001040
[FTKL] metagenome; soil
43
121
+
Ala
CGC
[ENA]
¢þ
>WENV180035194
FTKT01004865
[FTKT] metagenome; soil
96
174
+
Ala
CGC
[ENA]
¢þ
>W141236347
BAZE01000008
Actinomycetota
Nocardiopsis alba TP-A0876 [BAZE]
189847
189923
+
Ala
CGC
[ENA]
¡û
>W141282700
JAIY01000004
Actinomycetota
Kitasatospora sp. MBT66 [JAIY]
71371
71293
-
Ala
CGC
[ENA]
¡û
>W141282753
JAIZ01000170
Actinomycetota
Kitasatospora sp. MBT63 [JAIZ]
6904
6982
+
Ala
CGC
[ENA]
¡û
>WENV183750414
PPFU01299200
[PPFU] hypolithon metagenome; Antarctic Hypolithon
1770
1695
-
Ala
CGC
[ENA]
¢þ
>WENV170565626
FJVZ01001339
[FJVZ] metagenome; soil
218
296
+
Ala
CGC
[ENA]
¢þ
>WENV170565628
FJVZ01001451
[FJVZ] metagenome; soil
510
588
+
Ala
CGC
[ENA]
¢þ
>C181116298
CP025394
Actinomycetota
Kitasatospora sp. MMS16-BH015 [CP025394]
5286463
5286541
+
Ala
CGC
-
¡û
>C181198614
CP031264
Actinomycetota
Peterkaempfera bronchialis DSM 106435 [CP031264]
4158002
4158080
+
Ala
CGC
-
¡û
>W141726647
JNBY01000094
Actinomycetota
Kitasatospora cheerisanensis KCTC 2395 [JNBY]
315176
315253
+
Ala
CGC
[ENA]
¡û
>W141755590
JNWQ01000106
Actinomycetota
Streptomyces novaecaesareae [JNWQ]
12680
12602
-
Ala
CGC
[ENA]
¡û
>W141755616
JNWR01000005
Actinomycetota
Kitasatospora aureofaciens [JNWR]
194047
194125
+
Ala
CGC
[ENA]
¡û
>W141756064
JNWY01000016
Actinomycetota
Kitasatospora setae [JNWY]
43230
43306
+
Ala
CGC
[ENA]
¡û
>W141756162
JNWZ01000045
Actinomycetota
Kitasatospora phosalacinea [JNWZ]
43352
43428
+
Ala
CGC
[ENA]
¡û
>W141757014
JNXO01001408
Actinomycetota
Kitasatospora misakiensis [JNXO]
424
502
+
Ala
CGC
[ENA]
¡û
>W141757820
JNYE01000014
Actinomycetota
Kitasatospora phosalacinea [JNYE]
115971
116048
+
Ala
CGC
[ENA]
¡û
>W141759688
JNZN01001518
Actinomycetota
Streptomyces pyridomyceticus [JNZN]
570
492
-
Ala
CGC
[ENA]
¡û
>W141760867
JOAI01000021
Actinomycetota
Streptomyces sp. NRRL B-24484 [JOAI]
23936
24014
+
Ala
CGC
[ENA]
¡û
>W141761794
JOAY01000045
Actinomycetota
Streptomyces pyridomyceticus [JOAY]
52015
51937
-
Ala
CGC
[ENA]
¡û
>W141761939
JOBB01007087
Actinomycetota
Kitasatospora purpeofusca purpeofuscus [JOBB]
343
265
-
Ala
CGC
[ENA]
¡û
>W141763708
JOCF01000031
Actinomycetota
Streptomyces sp. NRRL WC-3742 [JOCF]
148390
148468
+
Ala
CGC
[ENA]
¡û
>W141765010
JODB01005906
Actinomycetota
Streptomyces sp. NRRL S-426 [JODB]
492
570
+
Ala
CGC
[ENA]
¡û
>W141766008
JODS01000007
Actinomycetota
Kitasatospora purpeofusca purpeofuscus [JODS]
29796
29718
-
Ala
CGC
[ENA]
¡û
>W141767520
JOER01000013
Actinomycetota
Kitasatospora aureofaciens [JOER]
79721
79643
-
Ala
CGC
[ENA]
¡û
>W141768721
JOFK01000004
Actinomycetota
Kitasatospora aureofaciens avellaneus [JOFK]
65842
65920
+
Ala
CGC
[ENA]
¡û
>W141770057
JOGF01003667
Actinomycetota
Streptomyces sp. NRRL S-984 [JOGF]
338
260
-
Ala
CGC
[ENA]
¡û
>W141770102
JOGG01000025
Actinomycetota
Streptomyces sp. NRRL B-5680 [JOGG]
33395
33317
-
Ala
CGC
[ENA]
¡û
>W141770201
JOGH01000155
Actinomycetota
Kitasatospora sp. NRRL B-11411 [JOGH]
12001
11924
-
Ala
CGC
[ENA]
¡û
>W141771139
JOGY01001850
Actinomycetota
Streptomyces sp. NRRL S-1777 [JOGY]
7570
7492
-
Ala
CGC
[ENA]
¡û
>W141771650
JOHH01003688
Actinomycetota
Streptomyces sp. NRRL B-2030 [JOHH]
2661
2583
-
Ala
CGC
[ENA]
¡û
>W141771895
JOHM01000251
Actinomycetota
Streptomyces sp. NRRL F-6133 [JOHM]
1286
1363
+
Ala
CGC
[ENA]
¡û
>W141771938
JOHN01000003
Actinomycetota
Streptomyces sp. NRRL F-6131 [JOHN]
153242
153320
+
Ala
CGC
[ENA]
¡û
>W141772022
JOHO01000008
Actinomycetota
Streptomyces sp. NRRL S-350 [JOHO]
187786
187864
+
Ala
CGC
[ENA]
¡û
>W141774389
JOJA01000055
Actinomycetota
Streptomyces sp. NRRL S-384 [JOJA]
43685
43762
+
Ala
CGC
[ENA]
¡û
>W141818507
JQLN01000005
Actinomycetota
Kitasatospora mediocidica KCTC 9733 [JQLN]
820044
819966
-
Ala
CGC
[ENA]
¡û
>W141819660
JQMJ01000004
Actinomycetota
Streptacidiphilus rugosus AM-16 [JQMJ]
6801130
6801052
-
Ala
CGC
[ENA]
¡û
>W141819762
JQML01000001
Actinomycetota
Streptacidiphilus albus JL83 [JQML]
5479004
5479080
+
Ala
CGC
[ENA]
¡û
>W141819962
JQMO01000003
Actinomycetota
Kitasatospora azatica KCTC 9699 [JQMO]
2214855
2214933
+
Ala
CGC
[ENA]
¡û
>W1910548132
FZOH01000007
Actinomycetota
Geodermatophilus saharensis DSM 45423 [FZOH]
85698
85623
-
Ala
CGC
[ENA]
¡û
>W1910548517
FZOO01000007
Actinomycetota
Geodermatophilus pulveris DSM 46839 [FZOO]
132302
132227
-
Ala
CGC
[ENA]
¡û
>W1911083718
NNBO01000008
Actinomycetota
Kitasatospora sp. CB02891 [NNBO]
66387
66311
-
Ala
CGC
[ENA]
¡û
>W1911243770
NSGV01000001
Actinomycetota
Streptomyces sp. TLI_235 [NSGV]
3271014
3270936
-
Ala
CGC
[ENA]
¡û
>W1911494849
OBMJ01000001
Actinomycetota
Streptomyces sp. 1331.2 [OBMJ]
3051740
3051662
-
Ala
CGC
[ENA]
¡û
>W1810073008
PEFQ01000001
Actinomycetota
Streptomyces sp. 1 [PEFQ]
4489639
4489715
+
Ala
CGC
[ENA]
¡û
>W1810120769
PHTW01000001
Actinomycetota
Streptomyces sp. 4121.5 [PHTW]
3281130
3281053
-
Ala
CGC
[ENA]
¡û
>W1810121551
PHUK01000001
Actinomycetota
Kitasatospora sp. OK780 [PHUK]
3427926
3427848
-
Ala
CGC
[ENA]
¡û
>W1810173005
PJMT01000001
Actinomycetota
Streptomyces sp. GP55 [PJMT]
5063110
5063188
+
Ala
CGC
[ENA]
¡û
>W1810394690
PYBW01000030
Actinomycetota
Streptomyces tateyamensis ATCC 21389 [PYBW]
122244
122322
+
Ala
CGC
[ENA]
¡û
>W1810684529
QKYN01000052
Actinomycetota
Streptacidiphilus pinicola MMS16-CNU450 [QKYN]
17258
17336
+
Ala
CGC
[ENA]
¡û
>W1810694023
QLLT01000020
Actinomycetota
Kitasatospora sp. SolWspMP-SS2h [QLLT]
86591
86515
-
Ala
CGC
[ENA]
¡û
>W1810907955
QVIG01000001
Actinomycetota
Kitasatospora xanthocidica MMS17-GH009 [QVIG]
6294483
6294561
+
Ala
CGC
[ENA]
¡û
>W1510013976
BBPL01000046
Actinomycetota
Streptacidiphilus albus NBRC 100918 [BBPL]
29142
29218
+
Ala
CGC
[ENA]
¡û
>W1510014056
BBPN01000002
Actinomycetota
Streptacidiphilus jiangxiensis NBRC 100920 [BBPN]
44804
44882
+
Ala
CGC
[ENA]
¡û
>W1510014132
BBPO01000006
Actinomycetota
Streptacidiphilus neutrinimicus NBRC 100921 [BBPO]
179789
179867
+
Ala
CGC
[ENA]
¡û
>W1510014190
BBPP01000002
Actinomycetota
Streptacidiphilus melanogenes NBRC 103184 [BBPP]
251557
251479
-
Ala
CGC
[ENA]
¡û
>W1510014262
BBPQ01000001
Actinomycetota
Streptacidiphilus anmyonensis NBRC 103185 [BBPQ]
316695
316617
-
Ala
CGC
[ENA]
¡û
>C11111750
AP010968
Actinomycetota
Kitasatospora setae KM-6054 [AP010968]
5076388
5076464
+
Ala
CGC
[Ensembl]
¡û
>W1511311651
JPRF01000393
Actinomycetota
Kitasatospora aureofaciens ATCC 10762 [JPRF]
7264
7186
-
Ala
CGC
[ENA]
¡û
>W1511519299
JXZB01000004
Actinomycetota
Kitasatospora griseola MF730-N6 [JXZB]
2854767
2854843
+
Ala
CGC
[ENA]
¡û
>W1511529086
JYJF01000076
Actinomycetota
Saccharothrix sp. ST-888 [JYJF]
19351
19427
+
Ala
CGC
[ENA]
¡û
>W1511545176
JZKG01000032
Actinomycetota
Streptomyces rubellomurinus subsp. indigoferus ATCC 31304 [JZKG]
31177
31099
-
Ala
CGC
[ENA]
¡û
>W1511545241
JZKH01000024
Actinomycetota
Streptomyces rubellomurinus ATCC 31215 [JZKH]
61865
61943
+
Ala
CGC
[ENA]
¡û
>W1511555656
JZWY01000547
Actinomycetota
Streptomyces sp. NRRL S-495 [JZWY]
3284
3206
-
Ala
CGC
[ENA]
¡û
>W1511590472
LBHA01000395
Actinomycetota
Kitasatospora aureofaciens NRRL 2209 [LBHA]
33437
33359
-
Ala
CGC
[ENA]
¡û
>W1511687930
LFVW01000608
Actinomycetota
Kitasatospora sp. MY 5-36 [LFVW]
542
620
+
Ala
CGC
[ENA]
¡û
>W1511696782
LGDO01000075
Actinomycetota
Streptomyces sp. XY431 [LGDO]
12624
12546
-
Ala
CGC
[ENA]
¡û
>C131006743
CP003788
Actinomycetota
Nocardiopsis alba ATCC BAA-2165 [CP003788]
1315713
1315637
-
Ala
CGC
[Ensembl]
¡û
>W1610633401
LIQR01000345
Actinomycetota
Peterkaempfera griseoplana griseoplanus [LIQR]
876
950
+
Ala
CGC
[ENA]
¡û
>W1610650817
LJJF01000001
Actinomycetota
Streptomyces sp. MJM8645 [LJJF]
3259381
3259303
-
Ala
CGC
[ENA]
¡û
>W1610722601
LMCT01000001
Actinomycetota
Kitasatospora sp. Root107 [LMCT]
497385
497309
-
Ala
CGC
[ENA]
¡û
>W1610729314
LMHX01000023
Actinomycetota
Kitasatospora sp. Root187 [LMHX]
266441
266517
+
Ala
CGC
[ENA]
¡û
>W1710544659
FOAZ01000001
Actinomycetota
Streptacidiphilus jiangxiensis [FOAZ]
186696
186774
+
Ala
CGC
[ENA]
¡û
>W1710548965
FOEE01000004
Actinomycetota
Trujillella endophytica endophyticus [FOEE]
347946
347870
-
Ala
CGC
[ENA]
¡û
>W1710571748
FOWE01000002
Actinomycetota
Geodermatophilus obscurus [FOWE]
68735
68811
+
Ala
CGC
[ENA]
¡û
>W1710577733
FPBA01000007
Actinomycetota
Geodermatophilus amargosae [FPBA]
177259
177183
-
Ala
CGC
[ENA]
¡û
>W1710584867
FQVX01000001
Actinomycetota
Geodermatophilus nigrescens [FQVX]
584355
584431
+
Ala
CGC
[ENA]
¡û
>W1710765803
LIPD01000002
Actinomycetota
Streptomyces sp. CB02056 [LIPD]
58498
58576
+
Ala
CGC
[ENA]
¡û
>W1710767833
LIQR01000345
Actinomycetota
Peterkaempfera griseoplana griseoplanus [LIQR]
876
950
+
Ala
CGC
[ENA]
¡û
>W1710769514
LISX01000004
Actinomycetota
Kitasatospora sp. CB01950 [LISX]
314505
314429
-
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK