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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275963 (25 seq.)
>WENV180019782
FTCO01000367
[FTCO] metagenome; soil
31
105
+
Ala
CGC
[ENA]
¡û
>C08008960
AM746676
Myxococcota
Sorangium cellulosum So ce56 So ce 56 [AM746676]
477427
477352
-
Ala
CGC
[Ensembl]
¡û
>C181012529
CP012673
Myxococcota
Sorangium cellulosum So ce26 [CP012673]
768407
768333
-
Ala
CGC
-
¡û
>C191010052
CP012670
Myxococcota
Sorangium cellulosum So ceGT47 [CP012670]
530814
530740
-
Ala
CGC
-
¡û
>C191010109
CP012672
Myxococcota
Sorangium cellulosum So ce836 [CP012672]
771809
771735
-
Ala
CGC
-
¡û
>W2011690768
SSMQ01000008
Myxococcota
Polyangium fumosum DSM 14668 [SSMQ]
186980
186905
-
Ala
CGC
[ENA]
¡û
>W2012351029
WJIE01000013
Myxococcota
Polyangium spumosum DSM 14734 [WJIE]
160280
160355
+
Ala
CGC
[ENA]
¡û
>C231448212
CP102233
Myxococcota
Sorangium sp. Soce836 [CP102233]
771822
771748
-
Ala
CGC
-
¡û
>C131010796
CP003969
Myxococcota
Sorangium cellulosum So0157-2 [CP003969]
715707
715632
-
Ala
CGC
[Ensembl]
¡û
>W1610520404
JELX01003538
Myxococcota
Sorangium cellulosum [JELX]
712
637
-
Ala
CGC
[ENA]
¡û
>W1610520453
JELY01003014
Myxococcota
Sorangium cellulosum [JELY]
850
925
+
Ala
CGC
[ENA]
¡û
>W1610520467
JELZ01000380
Myxococcota
Sorangium cellulosum [JELZ]
864
939
+
Ala
CGC
[ENA]
¡û
>W1610520552
JEMA01001158
Myxococcota
Sorangium cellulosum [JEMA]
691
616
-
Ala
CGC
[ENA]
¡û
>W1610520584
JEMB01002390
Myxococcota
Sorangium cellulosum [JEMB]
902
827
-
Ala
CGC
[ENA]
¡û
>W1610520612
JEMC01000562
Myxococcota
Sorangium cellulosum [JEMC]
830
905
+
Ala
CGC
[ENA]
¡û
>W1610520674
JEMD01001392
Myxococcota
Sorangium cellulosum [JEMD]
2207
2282
+
Ala
CGC
[ENA]
¡û
>W1610520724
JEME01001192
Myxococcota
Sorangium cellulosum [JEME]
1774
1699
-
Ala
CGC
[ENA]
¡û
>W1710615882
JELX01003538
Myxococcota
Sorangium cellulosum [JELX]
712
637
-
Ala
CGC
[ENA]
¡û
>W1710615931
JELY01003014
Myxococcota
Sorangium cellulosum [JELY]
850
925
+
Ala
CGC
[ENA]
¡û
>W1710615945
JELZ01000380
Myxococcota
Sorangium cellulosum [JELZ]
864
939
+
Ala
CGC
[ENA]
¡û
>W1710616030
JEMA01001158
Myxococcota
Sorangium cellulosum [JEMA]
691
616
-
Ala
CGC
[ENA]
¡û
>W1710616062
JEMB01002390
Myxococcota
Sorangium cellulosum [JEMB]
902
827
-
Ala
CGC
[ENA]
¡û
>W1710616090
JEMC01000562
Myxococcota
Sorangium cellulosum [JEMC]
830
905
+
Ala
CGC
[ENA]
¡û
>W1710616152
JEMD01001392
Myxococcota
Sorangium cellulosum [JEMD]
2207
2282
+
Ala
CGC
[ENA]
¡û
>W1710616202
JEME01001192
Myxococcota
Sorangium cellulosum [JEME]
1774
1699
-
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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