This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275964 (21 seq.)
>WENV180015909
FSTQ01000382
[FSTQ] metagenome; soil
10033
9960
-
His
GTG
[ENA]
¡û
>WENV180258330
OBEQ010997134
[OBEQ] groundwater metagenome; groundwater
1709
1634
-
His
GTG
[ENA]
¡û
>WENV181166054
OEIS01406915
[OEIS] soil metagenome; soil
158
83
-
His
GTG
[ENA]
¡û
>C08008921
AM746676
Myxococcota
Sorangium cellulosum So ce56 So ce 56 [AM746676]
8628130
8628205
+
His
GTG
[Ensembl]
¡û
>C181012490
CP012673
Myxococcota
Sorangium cellulosum So ce26 [CP012673]
10302832
10302907
+
His
GTG
-
¡û
>C191010019
CP012670
Myxococcota
Sorangium cellulosum So ceGT47 [CP012670]
7318198
7318273
+
His
GTG
-
¡û
>C191010071
CP012672
Myxococcota
Sorangium cellulosum So ce836 [CP012672]
10436015
10436090
+
His
GTG
-
¡û
>C231448174
CP102233
Myxococcota
Sorangium sp. Soce836 [CP102233]
10392254
10392329
+
His
GTG
-
¡û
>C131010755
CP003969
Myxococcota
Sorangium cellulosum So0157-2 [CP003969]
10500088
10500163
+
His
GTG
[Ensembl]
¡û
>W1610520481
JELZ01001105
Myxococcota
Sorangium cellulosum [JELZ]
233
308
+
His
GTG
[ENA]
¡û
>W1610520545
JEMA01000893
Myxococcota
Sorangium cellulosum [JEMA]
196
271
+
His
GTG
[ENA]
¡û
>W1610520575
JEMB01001436
Myxococcota
Sorangium cellulosum [JEMB]
6218
6143
-
His
GTG
[ENA]
¡û
>W1610520648
JEMC01003077
Myxococcota
Sorangium cellulosum [JEMC]
134
209
+
His
GTG
[ENA]
¡û
>W1610520687
JEMD01001676
Myxococcota
Sorangium cellulosum [JEMD]
2724
2649
-
His
GTG
[ENA]
¡û
>W1610520711
JEME01000138
Myxococcota
Sorangium cellulosum [JEME]
224
299
+
His
GTG
[ENA]
¡û
>W1710615959
JELZ01001105
Myxococcota
Sorangium cellulosum [JELZ]
233
308
+
His
GTG
[ENA]
¡û
>W1710616023
JEMA01000893
Myxococcota
Sorangium cellulosum [JEMA]
196
271
+
His
GTG
[ENA]
¡û
>W1710616053
JEMB01001436
Myxococcota
Sorangium cellulosum [JEMB]
6218
6143
-
His
GTG
[ENA]
¡û
>W1710616126
JEMC01003077
Myxococcota
Sorangium cellulosum [JEMC]
134
209
+
His
GTG
[ENA]
¡û
>W1710616165
JEMD01001676
Myxococcota
Sorangium cellulosum [JEMD]
2724
2649
-
His
GTG
[ENA]
¡û
>W1710616189
JEME01000138
Myxococcota
Sorangium cellulosum [JEME]
224
299
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK