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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.276122 (106 seq.)
>W1710852860
LLWC01000009
Alphaproteobacteria
Pseudovibrio hongkongensis [LLWC]
281447
281523
+
Arg
ACG
[ENA]
¡û
>W1710852861
LLWC01000009
Alphaproteobacteria
Pseudovibrio hongkongensis [LLWC]
281565
281641
+
Arg
ACG
[ENA]
¡û
>W1710852961
LLWE01000030
Alphaproteobacteria
Pseudovibrio stylochi [LLWE]
19067
19143
+
Arg
ACG
[ENA]
¡û
>W1710852962
LLWE01000030
Alphaproteobacteria
Pseudovibrio stylochi [LLWE]
19200
19276
+
Arg
ACG
[ENA]
¡û
>W1710859361
LMCC01000004
Alphaproteobacteria
Pseudovibrio sp. Ad13 [LMCC]
235214
235290
+
Arg
ACG
[ENA]
¡û
>W1710859362
LMCC01000004
Alphaproteobacteria
Pseudovibrio sp. Ad13 [LMCC]
235365
235441
+
Arg
ACG
[ENA]
¡û
>W1710859423
LMCD01000004
Alphaproteobacteria
Pseudovibrio sp. Ad14 [LMCD]
195515
195591
+
Arg
ACG
[ENA]
¡û
>W1710859424
LMCD01000004
Alphaproteobacteria
Pseudovibrio sp. Ad14 [LMCD]
195666
195742
+
Arg
ACG
[ENA]
¡û
>W1710859482
LMCE01000025
Alphaproteobacteria
Pseudovibrio sp. Ad26 [LMCE]
14264
14340
+
Arg
ACG
[ENA]
¡û
>W1710859483
LMCE01000025
Alphaproteobacteria
Pseudovibrio sp. Ad26 [LMCE]
14415
14491
+
Arg
ACG
[ENA]
¡û
>W1710859541
LMCF01000016
Alphaproteobacteria
Pseudovibrio sp. Ad37 [LMCF]
127862
127938
+
Arg
ACG
[ENA]
¡û
>W1710859542
LMCF01000016
Alphaproteobacteria
Pseudovibrio sp. Ad37 [LMCF]
128013
128089
+
Arg
ACG
[ENA]
¡û
>W1710859605
LMCG01000027
Alphaproteobacteria
Pseudovibrio sp. Ad46 [LMCG]
106881
106957
+
Arg
ACG
[ENA]
¡û
>W1710859606
LMCG01000027
Alphaproteobacteria
Pseudovibrio sp. Ad46 [LMCG]
107032
107108
+
Arg
ACG
[ENA]
¡û
>W1710859664
LMCH01000008
Alphaproteobacteria
Pseudovibrio sp. Ad5 [LMCH]
106883
106959
+
Arg
ACG
[ENA]
¡û
>W1710859665
LMCH01000008
Alphaproteobacteria
Pseudovibrio sp. Ad5 [LMCH]
107034
107110
+
Arg
ACG
[ENA]
¡û
>W1710859772
LMCI01000047
Alphaproteobacteria
Pseudovibrio sp. W64 [LMCI]
217367
217443
+
Arg
ACG
[ENA]
¡û
>W1710859773
LMCI01000047
Alphaproteobacteria
Pseudovibrio sp. W64 [LMCI]
217518
217594
+
Arg
ACG
[ENA]
¡û
>W1710859792
LMCJ01000013
Alphaproteobacteria
Pseudovibrio sp. W74 [LMCJ]
196041
196117
+
Arg
ACG
[ENA]
¡û
>W1710859793
LMCJ01000013
Alphaproteobacteria
Pseudovibrio sp. W74 [LMCJ]
196192
196268
+
Arg
ACG
[ENA]
¡û
>W1710859852
LMCK01000075
Alphaproteobacteria
Pseudovibrio sp. WM33 [LMCK]
23610
23534
-
Arg
ACG
[ENA]
¡û
>W1710859853
LMCK01000075
Alphaproteobacteria
Pseudovibrio sp. WM33 [LMCK]
23459
23383
-
Arg
ACG
[ENA]
¡û
>W1711167023
LVVZ01000014
Alphaproteobacteria
Pseudovibrio exalbescens [LVVZ]
13319
13243
-
Arg
ACG
[ENA]
¡û
>W1711167024
LVVZ01000014
Alphaproteobacteria
Pseudovibrio exalbescens [LVVZ]
13162
13086
-
Arg
ACG
[ENA]
¡û
>W1711424965
MIEL01000026
Alphaproteobacteria
Pseudovibrio brasiliensis Ab134 [MIEL]
295411
295335
-
Arg
ACG
[ENA]
¡û
>W1711424966
MIEL01000026
Alphaproteobacteria
Pseudovibrio brasiliensis Ab134 [MIEL]
295260
295184
-
Arg
ACG
[ENA]
¡û
>W1711510410
MLAX01000001
Alphaproteobacteria
Alphaproteobacteria bacterium AO1-B [MLAX]
544261
544337
+
Arg
ACG
[ENA]
¡û
>W1711827032
MXQE01000006
Alphaproteobacteria
Labrenzia sp. CP4 [MXQE]
219702
219626
-
Arg
ACG
[ENA]
¡û
>C171097479
CP019630
Alphaproteobacteria
Roseibium aggregatum RMAR6-6 [CP019630]
1617553
1617477
-
Arg
ACG
-
¡û
>W131229352
AUGS01000015
Alphaproteobacteria
Pseudovibrio exalbescens DSM 16456 [AUGS]
13293
13217
-
Arg
ACG
[ENA]
¡û
>W131229353
AUGS01000015
Alphaproteobacteria
Pseudovibrio exalbescens DSM 16456 [AUGS]
13136
13060
-
Arg
ACG
[ENA]
¡û
>w020432
AAUW01000006
Alphaproteobacteria
Roseibium aggregatum IAM 12614 [AAUW]
265226
265304
+
Arg
ACG
[ENA]
¡û
>W141152647
AXBY01000045
Alphaproteobacteria
Labrenzia sp. C1B10 [AXBY]
730958
730882
-
Arg
ACG
[ENA]
¡û
>W141152957
AXCE01000062
Alphaproteobacteria
Labrenzia sp. C1B70 [AXCE]
18908
18984
+
Arg
ACG
[ENA]
¡û
>W141200773
AYYG01000041
Alphaproteobacteria
Labrenzia sp. DG1229 [AYYG]
141270
141194
-
Arg
ACG
[ENA]
¡û
>WENV170779793
LZQR01000873
[LZQR] oil field metagenome; sample BH-FW-24 from oil reservoir
3133
3209
+
Arg
ACG
[ENA]
¢þ
>WENV170820199
MDSY01000213
[MDSY] marine metagenome; seawater
2566
2490
-
Arg
ACG
[ENA]
¢þ
>WENV170840973
MDSZ01214193
[MDSZ] marine metagenome; seawater
1402
1326
-
Arg
ACG
[ENA]
¢þ
>WENV170962344
MRWF01012709
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
10557
10633
+
Arg
ACG
[ENA]
¢þ
>WENV170964011
MRWG01001935
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
84
8
-
Arg
ACG
[ENA]
¢þ
>WENV170964865
MRWG01062013
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
398
322
-
Arg
ACG
[ENA]
¢þ
>WENV170964866
MRWG01062034
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
398
322
-
Arg
ACG
[ENA]
¢þ
>C181067711
CP022529
Alphaproteobacteria
Labrenzia sp. VG12 [CP022529]
5314770
5314846
+
Arg
ACG
-
¡û
>C181220385
LT703003
Alphaproteobacteria
Anderseniella sp. Alg231-50 [LT703003, LT703004, LT703005, LT703006, LT703007, LT703008, LT703009, LT703010]
786358
786434
+
Arg
ACG
-
¡û
>C191188425
CP041191
Alphaproteobacteria
Labrenzia sp. PHM005 [CP041191]
65378
65302
-
Arg
ACG
-
¡û
>W141562705
JHZK01000002
Alphaproteobacteria
Afifella pfennigii DSM 17143 [JHZK]
245428
245352
-
Arg
ACG
[ENA]
¡û
>W09111983
ABXL01000002
Alphaproteobacteria
Pseudovibrio sp. JE062 [ABXL]
8288
8364
+
Arg
ACG
[ENA]
¡û
>W09111984
ABXL01000002
Alphaproteobacteria
Pseudovibrio sp. JE062 [ABXL]
8439
8515
+
Arg
ACG
[ENA]
¡û
>W09118278
ACCU01000016
Alphaproteobacteria
Roseibium alexandrii DFL-11 [ACCU]
136777
136853
+
Arg
ACG
[ENA]
¡û
>W141804445
JPHU01000014
Alphaproteobacteria
Parvularcula oceani [JPHU]
50767
50691
-
Arg
ACG
[ENA]
¡û
>W1910285133
FREW01000002
Alphaproteobacteria
Labrenzia sp. Alg231-36 [FREW]
876331
876407
+
Arg
ACG
[ENA]
¡û
>W1910285201
FREX01000006
Alphaproteobacteria
Pseudovibrio sp. Alg231-02 [FREX]
257370
257446
+
Arg
ACG
[ENA]
¡û
>W1910285202
FREX01000006
Alphaproteobacteria
Pseudovibrio sp. Alg231-02 [FREX]
257521
257597
+
Arg
ACG
[ENA]
¡û
>W1910989694
NKQT01000003
Alphaproteobacteria
Pseudovibrio exalbescens COD 22 [NKQT]
13320
13244
-
Arg
ACG
[ENA]
¡û
>W1910989695
NKQT01000003
Alphaproteobacteria
Pseudovibrio exalbescens COD 22 [NKQT]
13163
13087
-
Arg
ACG
[ENA]
¡û
>W1911532397
OGUZ01000014
Alphaproteobacteria
Labrenzia sp. EL143 [OGUZ]
200642
200718
+
Arg
ACG
[ENA]
¡û
>W1911538948
OMPG01000003
Alphaproteobacteria
Pseudovibrio ascidiaceicola AU243 [OMPG]
137359
137435
+
Arg
ACG
[ENA]
¡û
>W1911538949
OMPG01000003
Alphaproteobacteria
Pseudovibrio ascidiaceicola AU243 [OMPG]
137510
137586
+
Arg
ACG
[ENA]
¡û
>W1911765986
QXDF01000002
Alphaproteobacteria
Dichotomicrobium thermohalophilum DSM 5002 [QXDF]
239191
239115
-
Arg
ACG
[ENA]
¡û
>W1810887556
QUQO01000001
Alphaproteobacteria
Parvularcula marina SM1705 [QUQO]
2835963
2836039
+
Arg
ACG
[ENA]
¡û
>W11135858
AEFL01000056
Alphaproteobacteria
Roseibium sp. TrichSKD4 [AEFL]
82524
82600
+
Arg
ACG
[ENA]
¡û
>C121006660
CP003147
Alphaproteobacteria
Pseudovibrio sp. FO-BEG1 [CP003147]
1151178
1151254
+
Arg
ACG
[Ensembl]
¡û
>C161037934
CP011927
Alphaproteobacteria
Labrenzia sp. CP4 [CP011927]
5254005
5253929
-
Arg
ACG
-
¡û
>W1610091999
CXST01000002
Alphaproteobacteria
Roseibium aggregatum aggregata [CXST]
672075
672151
+
Arg
ACG
[ENA]
¡û
>W1610092137
CXWA01000009
Alphaproteobacteria
Roseibium album alba [CXWA]
108655
108579
-
Arg
ACG
[ENA]
¡û
>W1610092190
CXWC01000015
Alphaproteobacteria
Roseibium album alba [CXWC]
108655
108579
-
Arg
ACG
[ENA]
¡û
>W1610092205
CXWD01000002
Alphaproteobacteria
Roseibium alexandrii [CXWD]
201951
201875
-
Arg
ACG
[ENA]
¡û
>W1610092271
CXWE01000008
Alphaproteobacteria
Roseibium album alba [CXWE]
108655
108579
-
Arg
ACG
[ENA]
¡û
>W1610585598
LCWX01000132
Alphaproteobacteria
Pseudovibrio sp. POLY-S9 [LCWX]
64810
64734
-
Arg
ACG
[ENA]
¡û
>W1610585599
LCWX01000132
Alphaproteobacteria
Pseudovibrio sp. POLY-S9 [LCWX]
64659
64583
-
Arg
ACG
[ENA]
¡û
>W1610715999
LLWC01000009
Alphaproteobacteria
Pseudovibrio hongkongensis [LLWC]
281447
281523
+
Arg
ACG
[ENA]
¡û
>W1610716000
LLWC01000009
Alphaproteobacteria
Pseudovibrio hongkongensis [LLWC]
281565
281641
+
Arg
ACG
[ENA]
¡û
>W1610716100
LLWE01000030
Alphaproteobacteria
Pseudovibrio stylochi [LLWE]
19067
19143
+
Arg
ACG
[ENA]
¡û
>W1610716101
LLWE01000030
Alphaproteobacteria
Pseudovibrio stylochi [LLWE]
19200
19276
+
Arg
ACG
[ENA]
¡û
>W1610721707
LMCC01000004
Alphaproteobacteria
Pseudovibrio sp. Ad13 [LMCC]
235214
235290
+
Arg
ACG
[ENA]
¡û
>W1610721708
LMCC01000004
Alphaproteobacteria
Pseudovibrio sp. Ad13 [LMCC]
235365
235441
+
Arg
ACG
[ENA]
¡û
>W1610721769
LMCD01000004
Alphaproteobacteria
Pseudovibrio sp. Ad14 [LMCD]
195515
195591
+
Arg
ACG
[ENA]
¡û
>W1610721770
LMCD01000004
Alphaproteobacteria
Pseudovibrio sp. Ad14 [LMCD]
195666
195742
+
Arg
ACG
[ENA]
¡û
>W1610721828
LMCE01000025
Alphaproteobacteria
Pseudovibrio sp. Ad26 [LMCE]
14264
14340
+
Arg
ACG
[ENA]
¡û
>W1610721829
LMCE01000025
Alphaproteobacteria
Pseudovibrio sp. Ad26 [LMCE]
14415
14491
+
Arg
ACG
[ENA]
¡û
>W1610721887
LMCF01000016
Alphaproteobacteria
Pseudovibrio sp. Ad37 [LMCF]
127862
127938
+
Arg
ACG
[ENA]
¡û
>W1610721888
LMCF01000016
Alphaproteobacteria
Pseudovibrio sp. Ad37 [LMCF]
128013
128089
+
Arg
ACG
[ENA]
¡û
>W1610721951
LMCG01000027
Alphaproteobacteria
Pseudovibrio sp. Ad46 [LMCG]
106881
106957
+
Arg
ACG
[ENA]
¡û
>W1610721952
LMCG01000027
Alphaproteobacteria
Pseudovibrio sp. Ad46 [LMCG]
107032
107108
+
Arg
ACG
[ENA]
¡û
>W1610722010
LMCH01000008
Alphaproteobacteria
Pseudovibrio sp. Ad5 [LMCH]
106883
106959
+
Arg
ACG
[ENA]
¡û
>W1610722011
LMCH01000008
Alphaproteobacteria
Pseudovibrio sp. Ad5 [LMCH]
107034
107110
+
Arg
ACG
[ENA]
¡û
>W1610722118
LMCI01000047
Alphaproteobacteria
Pseudovibrio sp. W64 [LMCI]
217367
217443
+
Arg
ACG
[ENA]
¡û
>W1610722119
LMCI01000047
Alphaproteobacteria
Pseudovibrio sp. W64 [LMCI]
217518
217594
+
Arg
ACG
[ENA]
¡û
>W1610722138
LMCJ01000013
Alphaproteobacteria
Pseudovibrio sp. W74 [LMCJ]
196041
196117
+
Arg
ACG
[ENA]
¡û
>W1610722139
LMCJ01000013
Alphaproteobacteria
Pseudovibrio sp. W74 [LMCJ]
196192
196268
+
Arg
ACG
[ENA]
¡û
>W1610722198
LMCK01000075
Alphaproteobacteria
Pseudovibrio sp. WM33 [LMCK]
23610
23534
-
Arg
ACG
[ENA]
¡û
>W1610722199
LMCK01000075
Alphaproteobacteria
Pseudovibrio sp. WM33 [LMCK]
23459
23383
-
Arg
ACG
[ENA]
¡û
>W1710095356
CXST01000002
Alphaproteobacteria
Roseibium aggregatum aggregata [CXST]
672075
672151
+
Arg
ACG
[ENA]
¡û
>W1710095494
CXWA01000009
Alphaproteobacteria
Roseibium album alba [CXWA]
108655
108579
-
Arg
ACG
[ENA]
¡û
>W1710095547
CXWC01000015
Alphaproteobacteria
Roseibium album alba [CXWC]
108655
108579
-
Arg
ACG
[ENA]
¡û
>W1710095562
CXWD01000002
Alphaproteobacteria
Roseibium alexandrii [CXWD]
201951
201875
-
Arg
ACG
[ENA]
¡û
>W1710095628
CXWE01000008
Alphaproteobacteria
Roseibium album alba [CXWE]
108655
108579
-
Arg
ACG
[ENA]
¡û
>W1710528170
FNMZ01000004
Alphaproteobacteria
Albimonas donghaensis [FNMZ]
30101
30025
-
Arg
ACG
[ENA]
¡û
>W1710564180
FOQH01000006
Alphaproteobacteria
Albimonas pacifica [FOQH]
150156
150232
+
Arg
ACG
[ENA]
¡û
>W1710567019
FOSK01000004
Alphaproteobacteria
Pseudovibrio ascidiaceicola [FOSK]
219204
219128
-
Arg
ACG
[ENA]
¡û
>W1710567020
FOSK01000004
Alphaproteobacteria
Pseudovibrio ascidiaceicola [FOSK]
219053
218977
-
Arg
ACG
[ENA]
¡û
>W1710577900
FPBD01000006
Alphaproteobacteria
Pseudovibrio denitrificans [FPBD]
222741
222665
-
Arg
ACG
[ENA]
¡û
>W1710577901
FPBD01000006
Alphaproteobacteria
Pseudovibrio denitrificans [FPBD]
222590
222514
-
Arg
ACG
[ENA]
¡û
>W1710660272
JXMT01000082
Alphaproteobacteria
Roseibium aggregatum aggregata [JXMT]
18819
18895
+
Arg
ACG
[ENA]
¡û
>W1710704789
LCWX01000132
Alphaproteobacteria
Pseudovibrio sp. POLY-S9 [LCWX]
64810
64734
-
Arg
ACG
[ENA]
¡û
>W1710704790
LCWX01000132
Alphaproteobacteria
Pseudovibrio sp. POLY-S9 [LCWX]
64659
64583
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK