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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.276122 (16 seq.)
>WENV180231318
OBCN01010820
[OBCN] human gut metagenome; human gut
698
621
-
Asp
GTC
[ENA]
¡û
>WENV180561714
OCKZ01002580
[OCKZ] human gut metagenome; human gut
740
816
+
Asp
GTC
[ENA]
¡û
>WENV180598000
OCPL01122022
[OCPL] human gut metagenome; ENVO:feces
144
220
+
Asp
GTC
[ENA]
¡û
>WENV183640308
OQVL01002944
[OQVL] human gut metagenome; human gut
6503
6579
+
Asp
GTC
[ENA]
¡û
>WENV183640543
OQVL01005908
[OQVL] human gut metagenome; human gut
2467
2544
+
Asp
GTC
[ENA]
¡û
>WENV183643107
OQVO01001585
[OQVO] human gut metagenome; human gut
5992
6068
+
Asp
GTC
[ENA]
¡û
>WENV183644791
OQVQ01000020
[OQVQ] human gut metagenome; human gut
50177
50253
+
Asp
GTC
[ENA]
¡û
>WENV183645137
OQVQ01001237
[OQVQ] human gut metagenome; human gut
5263
5340
+
Asp
GTC
[ENA]
¡û
>WENV183649844
OQVT01006150
[OQVT] human gut metagenome; human gut
4330
4253
-
Asp
GTC
[ENA]
¡û
>WENV183650018
OQVT01009014
[OQVT] human gut metagenome; human gut
3034
3110
+
Asp
GTC
[ENA]
¡û
>WENV183651438
OQVU01000028
[OQVU] human gut metagenome; human gut
10092
10016
-
Asp
GTC
[ENA]
¡û
>WENV183651762
OQVU01003815
[OQVU] human gut metagenome; human gut
2628
2705
+
Asp
GTC
[ENA]
¡û
>WENV183653701
OQWA01000209
[OQWA] human gut metagenome; human gut
12944
12867
-
Asp
GTC
[ENA]
¡û
>WENV183656913
OQWI01000829
[OQWI] human gut metagenome; human gut
12245
12322
+
Asp
GTC
[ENA]
¡û
>C211195783
CP064936
Spirochaetota
Treponema sp. RCC2812 [CP064936]
995843
995920
+
Asp
GTC
-
¡û
>C211195810
CP064936
Spirochaetota
Treponema sp. RCC2812 [CP064936]
671110
671034
-
Asp
GTC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK