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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.27615 (17 seq.)
>W1711069159
LSFL01000003
Bacteroidota
Polaribacter reichenbachii [LSFL]
21845
21758
-
Ser
GGA
[ENA]
¡û
>W1711069224
LSFM01000025
Bacteroidota
Polaribacter vadi [LSFM]
208751
208662
-
Ser
GGA
[ENA]
¡û
>W1712097606
NIDK01000005
Bacteroidota
Polaribacter haliotis [NIDK]
211968
212057
+
Ser
GGA
[ENA]
¡û
>C171063239
CP017477
Bacteroidota
Polaribacter vadi LPB0003 [CP017477]
3432601
3432690
+
Ser
GGA
-
¡û
>C171094182
CP019419
Bacteroidota
Polaribacter reichenbachii 6Alg 8T [CP019419]
2020617
2020704
+
Ser
GGA
-
¡û
>WENV170116541
CENG01150039
[CENG] marine metagenome genome assembly TARA_007_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
223
134
-
Ser
GGA
[ENA]
¡û
>WENV170120457
CENJ01320655
[CENJ] marine metagenome genome assembly TARA_009_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1553
1464
-
Ser
GGA
[ENA]
¡û
>W141563425
JHZZ01000001
Bacteroidota
Polaribacter sp. Hel_I_88 [JHZZ]
455897
455808
-
Ser
GGA
[ENA]
¡û
>W2010567607
JAATJG010000006
Bacteroidota
Wenyingzhuangia aestuarii DSM 105044 [JAATJG]
61658
61571
-
Ser
GGA
[ENA]
¡û
>W2011961838
VANR01000001
Bacteroidota
Polaribacter sp. DBTF-3 [VANR]
541587
541500
-
Ser
GGA
[ENA]
¡û
>W2110612605
JAHKQL010000004
Bacteroidota
Polaribacter vadi B2M17 [JAHKQL]
367336
367249
-
Ser
GGA
[ENA]
¡û
>C211153638
CP061813
Bacteroidota
Polaribacter haliotis KCTC 52418 [CP061813]
3056252
3056339
+
Ser
GGA
-
¡û
>C211296946
CP071869
Bacteroidota
Polaribacter sp. SM13 [CP071869]
3261730
3261643
-
Ser
GGA
-
¡û
>W2110776947
VRMM01000007
Bacteroidota
Polaribacter reichenbachii LMG 26443 [VRMM]
93650
93737
+
Ser
GGA
[ENA]
¡û
>C161068717
CP014224
Bacteroidota
Wenyingzhuangia fucanilytica CZ1127 [CP014224]
1717384
1717295
-
Ser
GGA
[Ensembl]
¡û
>W1610909687
LSFL01000003
Bacteroidota
Polaribacter reichenbachii [LSFL]
21845
21758
-
Ser
GGA
[ENA]
¡û
>W1610909752
LSFM01000025
Bacteroidota
Polaribacter vadi [LSFM]
208751
208662
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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