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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.276152 (6 seq.)
>C181081541
CP023445
Actinomycetota
Actinosynnema pretiosum X47 [CP023445]
1403622
1403546
-
Met
CAT
-
¡û
>C191064812
CP029607
Actinomycetota
Actinosynnema pretiosum subsp. pretiosum ATCC 31280 [CP029607]
1419203
1419128
-
Met
CAT
-
¡û
>W141757617
JNYA01000589
Actinomycetota
Actinosynnema pretiosum subsp. auranticum [JNYA]
3038
3115
+
Met
CAT
[ENA]
¡û
>W09108113
ABTA01000004
Actinomycetota
Actinosynnema mirum DSM 43827 [ABTA]
256464
256539
+
Met
CAT
[ENA]
¡û
>C09100652
CP001630
Actinomycetota
Actinosynnema mirum DSM 43827 [CP001630]
1430557
1430482
-
Met
CAT
[Ensembl]
¡û
>C211319821
CP073249
Actinomycetota
Actinosynnema pretiosum subsp. pretiosum ATCC 31280 [CP073249]
3363934
3364009
+
Ile2
CAT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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