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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.276164 (90 seq.)
>W1711934436
NAJR01000010
Gammaproteobacteria
Shewanella sp. Shew256 [NAJR]
146645
146721
+
Val
GAC
[ENA]
¡û
>W1711934437
NAJR01000010
Gammaproteobacteria
Shewanella sp. Shew256 [NAJR]
146760
146836
+
Val
GAC
[ENA]
¡û
>W1712080474
NGZL01000071
Gammaproteobacteria
Shewanella putrefaciens [NGZL]
4125
4049
-
Val
GAC
[ENA]
¡û
>WENV013061
AACY020357617
Marine microbial communities from Global Ocean Sampling (GOS)
6948
6870
-
Val
GAC
[ENA]
>WENV013062
AACY020357617
Marine microbial communities from Global Ocean Sampling (GOS)
7063
6985
-
Val
GAC
[ENA]
>C019852
CP000507
Gammaproteobacteria
Shewanella amazonensis SB2B [CP000507]
2156264
2156188
-
Val
GAC
[Ensembl]
¡û
>C022284
CP000469
Gammaproteobacteria
Shewanella sp. ANA-3 [CP000469]
2447917
2447841
-
Val
GAC
[Ensembl]
¡û
>C022285
CP000469
Gammaproteobacteria
Shewanella sp. ANA-3 [CP000469]
2447802
2447726
-
Val
GAC
[Ensembl]
¡û
>C022286
CP000469
Gammaproteobacteria
Shewanella sp. ANA-3 [CP000469]
2409546
2409470
-
Val
GAC
[Ensembl]
¡û
>C022385
CP000446
Gammaproteobacteria
Shewanella sp. MR-4 [CP000446]
2328413
2328337
-
Val
GAC
[Ensembl]
¡û
>C022386
CP000446
Gammaproteobacteria
Shewanella sp. MR-4 [CP000446]
2328298
2328222
-
Val
GAC
[Ensembl]
¡û
>C022453
CP000444
Gammaproteobacteria
Shewanella sp. MR-7 [CP000444]
2387285
2387361
+
Val
GAC
[Ensembl]
¡û
>C022454
CP000444
Gammaproteobacteria
Shewanella sp. MR-7 [CP000444]
2387400
2387476
+
Val
GAC
[Ensembl]
¡û
>C022594
CP000503
Gammaproteobacteria
Shewanella sp. W3-18-1 [CP000503]
2307355
2307279
-
Val
GAC
[Ensembl]
¡û
>C022595
CP000503
Gammaproteobacteria
Shewanella sp. W3-18-1 [CP000503]
2307226
2307150
-
Val
GAC
[Ensembl]
¡û
>C022999
AE014299
Gammaproteobacteria
Shewanella oneidensis MR-1 [AE014299]
2407149
2407073
-
Val
GAC
[Ensembl]
¡û
>C023000
AE014299
Gammaproteobacteria
Shewanella oneidensis MR-1 [AE014299]
2407035
2406959
-
Val
GAC
[Ensembl]
¡û
>C023254
CP000681
Gammaproteobacteria
Shewanella putrefaciens [CP000681]
2306135
2306211
+
Val
GAC
[Ensembl]
¡û
>C023255
CP000681
Gammaproteobacteria
Shewanella putrefaciens [CP000681]
2306261
2306337
+
Val
GAC
[Ensembl]
¡û
>w026348
ABAU01000112
Gammaproteobacteria
Shewanella baltica OS223 [ABAU]
385
307
-
Val
GAC
[ENA]
¡û
>w024896
AAZC01000026
Gammaproteobacteria
Shewanella baltica OS185 [AAZC]
59720
59642
-
Val
GAC
[ENA]
¡û
>w024895
AAZC01000026
Gammaproteobacteria
Shewanella baltica OS185 [AAZC]
59835
59757
-
Val
GAC
[ENA]
¡û
>w022913
AAWY01000054
Gammaproteobacteria
Shewanella putrefaciens 200 [AAWY]
19759
19681
-
Val
GAC
[ENA]
¡û
>WENV180311831
OBJT01610152
[OBJT] soil metagenome; soil
126
50
-
Val
GAC
[ENA]
¢þ
>W141171187
AXZL01000041
Gammaproteobacteria
Shewanella decolorationis S12 [AXZL]
31466
31390
-
Val
GAC
[ENA]
¡û
>W141171188
AXZL01000041
Gammaproteobacteria
Shewanella decolorationis S12 [AXZL]
31351
31275
-
Val
GAC
[ENA]
¡û
>C08008626
CP000753
Gammaproteobacteria
Shewanella baltica OS185 [CP000753]
2651422
2651498
+
Val
GAC
[Ensembl]
¡û
>C08008627
CP000753
Gammaproteobacteria
Shewanella baltica OS185 [CP000753]
2651537
2651613
+
Val
GAC
[Ensembl]
¡û
>W141227882
BALN01000003
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 [BALN]
106967
107043
+
Val
GAC
[ENA]
¡û
>W141227883
BALN01000003
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 [BALN]
107096
107172
+
Val
GAC
[ENA]
¡û
>W141277694
JAEU01000006
Gammaproteobacteria
Shewanella putrefaciens HRCR-6 [JAEU]
348989
348913
-
Val
GAC
[ENA]
¡û
>W141277695
JAEU01000006
Gammaproteobacteria
Shewanella putrefaciens HRCR-6 [JAEU]
348874
348798
-
Val
GAC
[ENA]
¡û
>ENV08001586
ABNJ01048922
mosquito metagenome; viral fraction from mixed species mosquitoes collected at Buena Vista Lagoon in Oceanside, CA
85
9
-
Val
GAC
[ENA]
¡û
>WENV020881
AACY020560156
Marine microbial communities from Global Ocean Sampling (GOS)
28419
28497
+
Val
GAC
[ENA]
>WENV020882
AACY020560156
Marine microbial communities from Global Ocean Sampling (GOS)
28546
28624
+
Val
GAC
[ENA]
>W09102816
AAIN01000031
Gammaproteobacteria
Shewanella amazonensis SB2B [AAIN]
5834
5910
+
Val
GAC
[ENA]
¡û
>W09103927
AALB01000036
Gammaproteobacteria
Shewanella putrefaciens CN-32 [AALB]
19301
19225
-
Val
GAC
[ENA]
¡û
>W09103928
AALB01000036
Gammaproteobacteria
Shewanella putrefaciens CN-32 [AALB]
19175
19099
-
Val
GAC
[ENA]
¡û
>W09104053
AALH01000031
Gammaproteobacteria
Shewanella sp. ANA-3 [AALH]
3901
3977
+
Val
GAC
[ENA]
¡û
>W09104054
AALH01000031
Gammaproteobacteria
Shewanella sp. ANA-3 [AALH]
4016
4092
+
Val
GAC
[ENA]
¡û
>W09104055
AALH01000031
Gammaproteobacteria
Shewanella sp. ANA-3 [AALH]
42272
42348
+
Val
GAC
[ENA]
¡û
>W09104341
AALN01000160
Gammaproteobacteria
Shewanella sp. W3-18-1 [AALN]
2563
2487
-
Val
GAC
[ENA]
¡û
>W09104342
AALN01000160
Gammaproteobacteria
Shewanella sp. W3-18-1 [AALN]
2434
2358
-
Val
GAC
[ENA]
¡û
>W09104633
AALX01000080
Gammaproteobacteria
Shewanella sp. MR-4 [AALX]
4826
4902
+
Val
GAC
[ENA]
¡û
>W09104634
AALX01000080
Gammaproteobacteria
Shewanella sp. MR-4 [AALX]
4941
5017
+
Val
GAC
[ENA]
¡û
>C181016822
CP015194
Gammaproteobacteria
Shewanella sp. Pdp11 [CP015194]
3049351
3049427
+
Val
GAC
-
¡û
>C181016823
CP015194
Gammaproteobacteria
Shewanella sp. Pdp11 [CP015194]
3049466
3049542
+
Val
GAC
-
¡û
>C181057601
CP022089
Gammaproteobacteria
Shewanella sp. FDAARGOS_354 [CP022089]
898297
898221
-
Val
GAC
-
¡û
>C181057602
CP022089
Gammaproteobacteria
Shewanella sp. FDAARGOS_354 [CP022089]
898182
898106
-
Val
GAC
-
¡û
>C181062959
CP022358
Gammaproteobacteria
Shewanella bicestrii JAB-1 [CP022358]
2397397
2397473
+
Val
GAC
-
¡û
>C181075045
CP023019
Gammaproteobacteria
Shewanella sp. WE21 [CP023019]
4472575
4472651
+
Val
GAC
-
¡û
>C181075046
CP023019
Gammaproteobacteria
Shewanella sp. WE21 [CP023019]
4472689
4472765
+
Val
GAC
-
¡û
>C181165474
CP028435
Gammaproteobacteria
Shewanella putrefaciens WS13 [CP028435]
395525
395449
-
Val
GAC
-
¡û
>C181165475
CP028435
Gammaproteobacteria
Shewanella putrefaciens WS13 [CP028435]
395396
395320
-
Val
GAC
-
¡û
>C181167893
CP028730
Gammaproteobacteria
Shewanella baltica 128 [CP028730]
2427706
2427782
+
Val
GAC
-
¡û
>W141520066
JGVI01000058
Gammaproteobacteria
Shewanella xiamenensis [JGVI]
136
60
-
Val
GAC
[ENA]
¡û
>C191205267
LR134303
Gammaproteobacteria
Shewanella putrefaciens NCTC12093 [LR134303]
4677566
4677490
-
Val
GAC
-
¡û
>C191205268
LR134303
Gammaproteobacteria
Shewanella putrefaciens NCTC12093 [LR134303]
4677451
4677375
-
Val
GAC
-
¡û
>C191205269
LR134303
Gammaproteobacteria
Shewanella putrefaciens NCTC12093 [LR134303]
4604472
4604396
-
Val
GAC
-
¡û
>C191206497
LR134321
Gammaproteobacteria
Shewanella baltica NCTC10737 [LR134321]
2466965
2466889
-
Val
GAC
-
¡û
>W1910913748
NHRI01000003
Gammaproteobacteria
Shewanella sp. BC20 [NHRI]
326767
326691
-
Val
GAC
[ENA]
¡û
>W1910913749
NHRI01000003
Gammaproteobacteria
Shewanella sp. BC20 [NHRI]
326652
326576
-
Val
GAC
[ENA]
¡û
>C09109220
CP001252
Gammaproteobacteria
Shewanella baltica OS223 [CP001252]
2595148
2595072
-
Val
GAC
[Ensembl]
¡û
>W1810073410
PEGD01000002
Gammaproteobacteria
Shewanella xiamenensis AS58 [PEGD]
3534347
3534271
-
Val
GAC
[ENA]
¡û
>W1810073411
PEGD01000002
Gammaproteobacteria
Shewanella xiamenensis AS58 [PEGD]
3534232
3534156
-
Val
GAC
[ENA]
¡û
>W1810587737
QFLG01000019
Gammaproteobacteria
Shewanella xiamenensis DCB2-1 [QFLG]
64823
64899
+
Val
GAC
[ENA]
¡û
>W1810587738
QFLG01000019
Gammaproteobacteria
Shewanella xiamenensis DCB2-1 [QFLG]
64938
65014
+
Val
GAC
[ENA]
¡û
>W1810721570
QNSC01000008
Gammaproteobacteria
Shewanella putrefaciens 97 [QNSC]
238478
238402
-
Val
GAC
[ENA]
¡û
>W1810721571
QNSC01000008
Gammaproteobacteria
Shewanella putrefaciens 97 [QNSC]
238364
238288
-
Val
GAC
[ENA]
¡û
>W1511403537
JTLE01000094
Gammaproteobacteria
Shewanella sp. ZOR0012 [JTLE]
2592569
2592645
+
Val
GAC
[ENA]
¡û
>W1511403538
JTLE01000094
Gammaproteobacteria
Shewanella sp. ZOR0012 [JTLE]
2592684
2592760
+
Val
GAC
[ENA]
¡û
>W1511403555
JTLE01000094
Gammaproteobacteria
Shewanella sp. ZOR0012 [JTLE]
2019791
2019715
-
Val
GAC
[ENA]
¡û
>C11121584
CP002457
Gammaproteobacteria
Shewanella putrefaciens [CP002457]
2269076
2269000
-
Val
GAC
[Ensembl]
¡û
>W11169891
AFOZ01000022
Gammaproteobacteria
Shewanella sp. HN-41 [AFOZ]
37093
37169
+
Val
GAC
[ENA]
¡û
>W11169892
AFOZ01000022
Gammaproteobacteria
Shewanella sp. HN-41 [AFOZ]
37219
37295
+
Val
GAC
[ENA]
¡û
>W11178500
AGEX01000018
Gammaproteobacteria
Shewanella baltica OS625 [AGEX]
692
616
-
Val
GAC
[ENA]
¡û
>W121103311
AKZL01000024
Gammaproteobacteria
Shewanella sp. POL2 [AKZL]
23454
23530
+
Val
GAC
[ENA]
¡û
>W121103312
AKZL01000024
Gammaproteobacteria
Shewanella sp. POL2 [AKZL]
23569
23645
+
Val
GAC
[ENA]
¡û
>W1610072114
BCUO01000028
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
21266
21342
+
Val
GAC
[ENA]
¡û
>W1610617846
LGYY01000135
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
22242
22318
+
Val
GAC
[ENA]
¡û
>W1610617847
LGYY01000135
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
22368
22444
+
Val
GAC
[ENA]
¡û
>W1710069316
BCUO01000028
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
21266
21342
+
Val
GAC
[ENA]
¡û
>W1710692520
JZWJ01000206
Gammaproteobacteria
Shewanella xiamenensis [JZWJ]
2319
2395
+
Val
GAC
[ENA]
¡û
>W1710692521
JZWJ01000211
Gammaproteobacteria
Shewanella xiamenensis [JZWJ]
21946
22022
+
Val
GAC
[ENA]
¡û
>W1710692522
JZWJ01000211
Gammaproteobacteria
Shewanella xiamenensis [JZWJ]
22060
22136
+
Val
GAC
[ENA]
¡û
>W1710706668
LDOA01000001
Gammaproteobacteria
Shewanella xiamenensis [LDOA]
4113969
4113893
-
Val
GAC
[ENA]
¡û
>W1710706669
LDOA01000001
Gammaproteobacteria
Shewanella xiamenensis [LDOA]
4113855
4113779
-
Val
GAC
[ENA]
¡û
>W1710706670
LDOA01000001
Gammaproteobacteria
Shewanella xiamenensis [LDOA]
4068066
4067990
-
Val
GAC
[ENA]
¡û
>W1710744021
LGYY01000135
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
22242
22318
+
Val
GAC
[ENA]
¡û
>W1710744022
LGYY01000135
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
22368
22444
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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