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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.276633 (105 seq.)
>C171115323
CP021059
Bacillota
Macrococcus canis KM 45013 [CP021059]
1839699
1839624
-
Phe
GAA
-
¡û
>C171115335
CP021059
Bacillota
Macrococcus canis KM 45013 [CP021059]
1789125
1789050
-
Phe
GAA
-
¡û
>W131170149
ARFI01000003
Bacillota
Paenibacillus sp. HW567 [ARFI]
1660
1735
+
Phe
GAA
[ENA]
¡û
>WENV180241864
OBDI01021141
[OBDI] metagenome; diffuse fluid
99
174
+
Phe
GAA
[ENA]
¢þ
>WENV180581802
OCML01001694
[OCML] metagenome; diffuse fluid
700
625
-
Phe
GAA
[ENA]
¢þ
>WENV181412372
OGCK01000010
[OGCK] hot springs metagenome; hot spring sediment
39057
38982
-
Phe
GAA
[ENA]
¢þ
>W141261749
CCBA010000004
Bacillota
Bacillus sp. EB01 [CCBA]
406717
406645
-
Phe
GAA
[ENA]
¡û
>WENV170575742
FPHL01000034
[FPHL] hydrothermal vent metagenome genome assembly, contig: NODE_42.; water
64372
64447
+
Phe
GAA
[ENA]
¢þ
>WENV170576117
FPIB01000026
[FPIB] hydrothermal vent metagenome genome assembly, contig: NODE_30.; water
94307
94382
+
Phe
GAA
[ENA]
¢þ
>WENV170614879
FUWD012843664
[FUWD] metagenome; unknown
14473
14548
+
Phe
GAA
[ENA]
¢þ
>WENV170640655
JFJP01023928
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
36269
36194
-
Phe
GAA
[ENA]
¢þ
>C191138888
CP035309
Bacillota
Macrococcus canis KM0218 [CP035309]
1727865
1727790
-
Phe
GAA
-
¡û
>C191138900
CP035309
Bacillota
Macrococcus canis KM0218 [CP035309]
1673567
1673492
-
Phe
GAA
-
¡û
>W1910749441
MJBJ02000011
Bacillota
Macrococcus caseolyticus subsp. hominis CCM 7927 [MJBJ]
711
786
+
Phe
GAA
[ENA]
¡û
>W1910749453
MJBJ02000011
Bacillota
Macrococcus caseolyticus subsp. hominis CCM 7927 [MJBJ]
46762
46836
+
Phe
GAA
[ENA]
¡û
>C09107388
AP009484
Bacillota
Macrococcus caseolyticus JCSC5402 [AP009484]
1717831
1717756
-
Phe
GAA
[Ensembl]
¡û
>C09107400
AP009484
Bacillota
Macrococcus caseolyticus JCSC5402 [AP009484]
1637055
1636981
-
Phe
GAA
[Ensembl]
¡û
>W1911618160
PPRM01000104
Bacillota
Macrococcus caseolyticus DSM 20597 [PPRM]
78028
77953
-
Phe
GAA
[ENA]
¡û
>W1911618172
PPRM01000104
Bacillota
Macrococcus caseolyticus DSM 20597 [PPRM]
30129
30055
-
Phe
GAA
[ENA]
¡û
>W1810064393
PDVL01000151
Bacillota
Staphylococcus aureus PR041 [PDVL]
4296
4222
-
Phe
GAA
[ENA]
¡û
>W1810064417
PDVL01001102
Bacillota
Staphylococcus aureus PR041 [PDVL]
106
31
-
Phe
GAA
[ENA]
¡û
>W1810103623
PGUW01000012
Bacillota
Bacillus sp. V5-8f [PGUW]
7056
6981
-
Phe
GAA
[ENA]
¡û
>W1810144869
PIOC01000013
Bacillota
Oceanobacillus arenosus CAU 1183 [PIOC]
956
1030
+
Phe
GAA
[ENA]
¡û
>W1810144975
PIOD01000023
Bacillota
Oceanobacillus chungangensis CAU 1051 [PIOD]
970
1045
+
Phe
GAA
[ENA]
¡û
>W1810151878
PIWJ01000012
Bacillota
Macrococcus caseolyticus 5190_42462 [PIWJ]
12155
12229
+
Phe
GAA
[ENA]
¡û
>W1810151898
PIWJ01000014
Bacillota
Macrococcus caseolyticus 5190_42462 [PIWJ]
1460
1535
+
Phe
GAA
[ENA]
¡û
>W1810151939
PIWK01000019
Bacillota
Macrococcus caseolyticus 5193_2_23 [PIWK]
12219
12293
+
Phe
GAA
[ENA]
¡û
>W1810151959
PIWK01000020
Bacillota
Macrococcus caseolyticus 5193_2_23 [PIWK]
1460
1535
+
Phe
GAA
[ENA]
¡û
>W1810152048
PIWM01000017
Bacillota
Macrococcus caseolyticus 5196_2_38 [PIWM]
12219
12293
+
Phe
GAA
[ENA]
¡û
>W1810152068
PIWM01000019
Bacillota
Macrococcus caseolyticus 5196_2_38 [PIWM]
1460
1535
+
Phe
GAA
[ENA]
¡û
>W1810152097
PIWN01000002
Bacillota
Macrococcus caseolyticus 5197_42554 [PIWN]
173161
173087
-
Phe
GAA
[ENA]
¡û
>W1810152125
PIWN01000018
Bacillota
Macrococcus caseolyticus 5197_42554 [PIWN]
26860
26785
-
Phe
GAA
[ENA]
¡û
>W1810152160
PIWO01000021
Bacillota
Macrococcus caseolyticus 5198_3_76 [PIWO]
12219
12293
+
Phe
GAA
[ENA]
¡û
>W1810152180
PIWO01000022
Bacillota
Macrococcus caseolyticus 5198_3_76 [PIWO]
1460
1535
+
Phe
GAA
[ENA]
¡û
>W1810152217
PIWP01000018
Bacillota
Macrococcus caseolyticus 5450_CC63A [PIWP]
12219
12293
+
Phe
GAA
[ENA]
¡û
>W1810152237
PIWP01000021
Bacillota
Macrococcus caseolyticus 5450_CC63A [PIWP]
1460
1535
+
Phe
GAA
[ENA]
¡û
>W1810152277
PIWQ01000006
Bacillota
Macrococcus caseolyticus 5452_CC83 [PIWQ]
1460
1535
+
Phe
GAA
[ENA]
¡û
>W1810152289
PIWQ01000006
Bacillota
Macrococcus caseolyticus 5452_CC83 [PIWQ]
49081
49155
+
Phe
GAA
[ENA]
¡û
>W1810152337
PIWR01000006
Bacillota
Macrococcus caseolyticus 5456_3_46 [PIWR]
1460
1535
+
Phe
GAA
[ENA]
¡û
>W1810152349
PIWR01000006
Bacillota
Macrococcus caseolyticus 5456_3_46 [PIWR]
49081
49155
+
Phe
GAA
[ENA]
¡û
>W1810152381
PIWS01000012
Bacillota
Macrococcus caseolyticus 5457_3_80 [PIWS]
6311
6385
+
Phe
GAA
[ENA]
¡û
>W1810152411
PIWS01000028
Bacillota
Macrococcus caseolyticus 5457_3_80 [PIWS]
1460
1535
+
Phe
GAA
[ENA]
¡û
>W1810152441
PIWT01000019
Bacillota
Macrococcus caseolyticus 5458_5_53 [PIWT]
12220
12294
+
Phe
GAA
[ENA]
¡û
>W1810152475
PIWT01000034
Bacillota
Macrococcus caseolyticus 5458_5_53 [PIWT]
1460
1535
+
Phe
GAA
[ENA]
¡û
>W1810152514
PIWU01000010
Bacillota
Macrococcus caseolyticus 5459_5_49 [PIWU]
1460
1535
+
Phe
GAA
[ENA]
¡û
>W1810152526
PIWU01000010
Bacillota
Macrococcus caseolyticus 5459_5_49 [PIWU]
49363
49437
+
Phe
GAA
[ENA]
¡û
>W1810152563
PIWV01000008
Bacillota
Macrococcus caseolyticus 5781_EF64 [PIWV]
71060
70985
-
Phe
GAA
[ENA]
¡û
>W1810152575
PIWV01000008
Bacillota
Macrococcus caseolyticus 5781_EF64 [PIWV]
23153
23079
-
Phe
GAA
[ENA]
¡û
>W1810152622
PIWW01000010
Bacillota
Macrococcus caseolyticus 5782_EF 83 [PIWW]
740
815
+
Phe
GAA
[ENA]
¡û
>W1810152634
PIWW01000010
Bacillota
Macrococcus caseolyticus 5782_EF 83 [PIWW]
48643
48717
+
Phe
GAA
[ENA]
¡û
>W1810152671
PIWX01000009
Bacillota
Macrococcus caseolyticus 5783_EF107 [PIWX]
70600
70525
-
Phe
GAA
[ENA]
¡û
>W1810152683
PIWX01000009
Bacillota
Macrococcus caseolyticus 5783_EF107 [PIWX]
22699
22625
-
Phe
GAA
[ENA]
¡û
>W1810152720
PIWY01000012
Bacillota
Macrococcus caseolyticus 5784_EF114 [PIWY]
34702
34776
+
Phe
GAA
[ENA]
¡û
>W1810152751
PIWY01000031
Bacillota
Macrococcus caseolyticus 5784_EF114 [PIWY]
1471
1546
+
Phe
GAA
[ENA]
¡û
>W1810152790
PIWZ01000006
Bacillota
Macrococcus caseolyticus 5785_EF123 [PIWZ]
116767
116692
-
Phe
GAA
[ENA]
¡û
>W1810152802
PIWZ01000006
Bacillota
Macrococcus caseolyticus 5785_EF123 [PIWZ]
69150
69076
-
Phe
GAA
[ENA]
¡û
>W1810152829
PIXA01000012
Bacillota
Macrococcus caseolyticus 5786_EF153 [PIXA]
6311
6385
+
Phe
GAA
[ENA]
¡û
>W1810152859
PIXA01000027
Bacillota
Macrococcus caseolyticus 5786_EF153 [PIXA]
1460
1535
+
Phe
GAA
[ENA]
¡û
>W1810152951
PIXC01000021
Bacillota
Macrococcus caseolyticus 5788_EF188 [PIXC]
12219
12293
+
Phe
GAA
[ENA]
¡û
>W1810152971
PIXC01000022
Bacillota
Macrococcus caseolyticus 5788_EF188 [PIXC]
1460
1535
+
Phe
GAA
[ENA]
¡û
>W1810153002
PIXD01000011
Bacillota
Macrococcus caseolyticus 5789_EF199 [PIXD]
34688
34762
+
Phe
GAA
[ENA]
¡û
>W1810153034
PIXD01000039
Bacillota
Macrococcus caseolyticus 5789_EF199 [PIXD]
1471
1546
+
Phe
GAA
[ENA]
¡û
>W1810153057
PIXE01000013
Bacillota
Macrococcus caseolyticus 5794_EF323 [PIXE]
40937
40863
-
Phe
GAA
[ENA]
¡û
>W1810153093
PIXE01000029
Bacillota
Macrococcus caseolyticus 5794_EF323 [PIXE]
1460
1535
+
Phe
GAA
[ENA]
¡û
>W1810153122
PIXF01000018
Bacillota
Macrococcus caseolyticus 5795_EF335 [PIXF]
12219
12293
+
Phe
GAA
[ENA]
¡û
>W1810153142
PIXF01000019
Bacillota
Macrococcus caseolyticus 5795_EF335 [PIXF]
1460
1535
+
Phe
GAA
[ENA]
¡û
>W1810153180
PIXG01000008
Bacillota
Macrococcus caseolyticus 5798_EF375 [PIXG]
71061
70986
-
Phe
GAA
[ENA]
¡û
>W1810153192
PIXG01000008
Bacillota
Macrococcus caseolyticus 5798_EF375 [PIXG]
23153
23079
-
Phe
GAA
[ENA]
¡û
>W1810153236
PIXH01000016
Bacillota
Macrococcus caseolyticus 5799_EF381 [PIXH]
12220
12294
+
Phe
GAA
[ENA]
¡û
>W1810153256
PIXH01000018
Bacillota
Macrococcus caseolyticus 5799_EF381 [PIXH]
1460
1535
+
Phe
GAA
[ENA]
¡û
>W1810153294
PIXI01000016
Bacillota
Macrococcus caseolyticus 5800_EF393a [PIXI]
28199
28125
-
Phe
GAA
[ENA]
¡û
>W1810153314
PIXI01000018
Bacillota
Macrococcus caseolyticus 5800_EF393a [PIXI]
1460
1535
+
Phe
GAA
[ENA]
¡û
>W1810153356
PIXJ01000014
Bacillota
Macrococcus caseolyticus 5804_BC29 [PIXJ]
1464
1539
+
Phe
GAA
[ENA]
¡û
>W1810153368
PIXJ01000014
Bacillota
Macrococcus caseolyticus 5804_BC29 [PIXJ]
49090
49164
+
Phe
GAA
[ENA]
¡û
>W1810153417
PIXK01000005
Bacillota
Macrococcus caseolyticus 5812_BC73 [PIXK]
1461
1536
+
Phe
GAA
[ENA]
¡û
>W1810153429
PIXK01000005
Bacillota
Macrococcus caseolyticus 5812_BC73 [PIXK]
49305
49379
+
Phe
GAA
[ENA]
¡û
>W1810153468
PIXL01000008
Bacillota
Macrococcus caseolyticus 5813_BC74 [PIXL]
70586
70511
-
Phe
GAA
[ENA]
¡û
>W1810153480
PIXL01000008
Bacillota
Macrococcus caseolyticus 5813_BC74 [PIXL]
22684
22610
-
Phe
GAA
[ENA]
¡û
>W1810153531
PIXM01000005
Bacillota
Macrococcus caseolyticus 5814_BC75 [PIXM]
1461
1536
+
Phe
GAA
[ENA]
¡û
>W1810153543
PIXM01000005
Bacillota
Macrococcus caseolyticus 5814_BC75 [PIXM]
49305
49379
+
Phe
GAA
[ENA]
¡û
>W1810153572
PIXN01000014
Bacillota
Macrococcus caseolyticus 5815_BC85 [PIXN]
40937
40863
-
Phe
GAA
[ENA]
¡û
>W1810153602
PIXN01000029
Bacillota
Macrococcus caseolyticus 5815_BC85 [PIXN]
1460
1535
+
Phe
GAA
[ENA]
¡û
>W1810153639
PIXO01000009
Bacillota
Macrococcus caseolyticus 5816_BC109 [PIXO]
70600
70525
-
Phe
GAA
[ENA]
¡û
>W1810153651
PIXO01000009
Bacillota
Macrococcus caseolyticus 5816_BC109 [PIXO]
22699
22625
-
Phe
GAA
[ENA]
¡û
>W1810153690
PIXP01000017
Bacillota
Macrococcus caseolyticus 5818_BC116 [PIXP]
12219
12293
+
Phe
GAA
[ENA]
¡û
>W1810153710
PIXP01000019
Bacillota
Macrococcus caseolyticus 5818_BC116 [PIXP]
1460
1535
+
Phe
GAA
[ENA]
¡û
>W1810443773
PZJF01000008
Bacillota
Macrococcus caseolyticus subsp. caseolyticus CCM 3540 [PZJF]
78904
78829
-
Phe
GAA
[ENA]
¡û
>W1810443785
PZJF01000008
Bacillota
Macrococcus caseolyticus subsp. caseolyticus CCM 3540 [PZJF]
31005
30931
-
Phe
GAA
[ENA]
¡û
>C151048118
CP009287
Bacillota
Paenibacillus graminis DSM 15220 [CP009287]
140309
140384
+
Phe
GAA
[Ensembl]
¡û
>C151048171
CP009287
Bacillota
Paenibacillus graminis DSM 15220 [CP009287]
6197001
6196926
-
Phe
GAA
[Ensembl]
¡û
>C151104373
LN831776
Bacillota
Paenibacillus riograndensis SBR5 [LN831776]
141122
141197
+
Phe
GAA
[Ensembl]
¡û
>C151104426
LN831776
Bacillota
Paenibacillus riograndensis SBR5 [LN831776]
6863876
6863801
-
Phe
GAA
[Ensembl]
¡û
>C161043017
CP012602
Bacillota
Bacillus sp. FJAT-18017 [CP012602]
199972
200044
+
Phe
GAA
[Ensembl]
¡û
>W1610632580
LIPY01000102
Bacillota
Paenibacillus jilunlii [LIPY]
96735
96660
-
Phe
GAA
[ENA]
¡û
>W1610632611
LIPY01000113
Bacillota
Paenibacillus jilunlii [LIPY]
160769
160694
-
Phe
GAA
[ENA]
¡û
>W1610633888
LIRA01000688
Bacillota
Paenibacillus riograndensis [LIRA]
6640
6565
-
Phe
GAA
[ENA]
¡û
>W1610633951
LIRB01000116
Bacillota
Paenibacillus riograndensis [LIRB]
82320
82245
-
Phe
GAA
[ENA]
¡û
>W1610633971
LIRB01000135
Bacillota
Paenibacillus riograndensis [LIRB]
1118
1193
+
Phe
GAA
[ENA]
¡û
>W1710521544
FNGM01000002
Bacillota
Paenibacillus jilunlii [FNGM]
522663
522588
-
Phe
GAA
[ENA]
¡û
>W1710521564
FNGM01000009
Bacillota
Paenibacillus jilunlii [FNGM]
267026
266951
-
Phe
GAA
[ENA]
¡û
>W1710766966
LIPY01000102
Bacillota
Paenibacillus jilunlii [LIPY]
96735
96660
-
Phe
GAA
[ENA]
¡û
>W1710766997
LIPY01000113
Bacillota
Paenibacillus jilunlii [LIPY]
160769
160694
-
Phe
GAA
[ENA]
¡û
>W1710768320
LIRA01000688
Bacillota
Paenibacillus riograndensis [LIRA]
6640
6565
-
Phe
GAA
[ENA]
¡û
>W1710768383
LIRB01000116
Bacillota
Paenibacillus riograndensis [LIRB]
82320
82245
-
Phe
GAA
[ENA]
¡û
>W1710768403
LIRB01000135
Bacillota
Paenibacillus riograndensis [LIRB]
1118
1193
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK