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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.276738 (86 seq.)
>W1710862889
LMER01000014
Actinomycetota
Angustibacter sp. Root456 [LMER]
40653
40577
-
Pro
GGG
[ENA]
¡û
>W1710864192
LMFR01000013
Actinomycetota
Microbacterium sp. Root53 [LMFR]
702
626
-
Pro
GGG
[ENA]
¡û
>W1710865564
LMGU01000001
Actinomycetota
Microbacterium sp. Root61 [LMGU]
17174
17248
+
Pro
GGG
[ENA]
¡û
>W1710996359
LQBJ01000007
Actinomycetota
Kocuria palustris [LQBJ]
42156
42230
+
Pro
GGG
[ENA]
¡û
>W1711061127
LRYC01000062
Actinomycetota
Microbacterium hominis [LRYC]
47544
47470
-
Pro
GGG
[ENA]
¡û
>W1711173332
LWCU01000003
Actinomycetota
Microbacterium sp. H83 [LWCU]
26816
26890
+
Pro
GGG
[ENA]
¡û
>W1711185429
LWNK01000308
Actinomycetota
Micrococcus sp. HMSC30C05 [LWNK]
2815
2889
+
Pro
GGG
[ENA]
¡û
>W1711187394
LWPL01000227
Actinomycetota
Micrococcus sp. HMSC31B01 [LWPL]
7116
7042
-
Pro
GGG
[ENA]
¡û
>W1711187580
LWPP01000290
Actinomycetota
Dietzia sp. HMSC21D01 [LWPP]
9748
9822
+
Pro
GGG
[ENA]
¡û
>W1711216512
LXMD01000027
Actinomycetota
Microbacterium sediminis [LXMD]
143924
143850
-
Pro
GGG
[ENA]
¡û
>W1711501815
MKSA01000547
Actinomycetota
Microbacterium sp. 70-38 [MKSA]
26291
26217
-
Pro
GGG
[ENA]
¡û
>C171034692
CP014989
Actinomycetota
Serinicoccus hydrothermalis JLT9 [CP014989]
451372
451298
-
Pro
GGG
-
¡û
>W131060669
ANHZ02000035
Actinomycetota
Kocuria palustris PEL [ANHZ]
794
718
-
Pro
GGG
[ENA]
¡û
>W131110209
APJM01000002
Actinomycetota
Leucobacter sp. UCD-THU [APJM]
29948
30022
+
Pro
GGG
[ENA]
¡û
>W131184987
ARTJ01000002
Actinomycetota
Microbacterium sp. 11MF [ARTJ]
1184958
1184884
-
Pro
GGG
[ENA]
¡û
>W131218533
ATXU01000013
Actinomycetota
Leucobacter chironomi DSM 19883 [ATXU]
23531
23457
-
Pro
GGG
[ENA]
¡û
>W131235268
AULK01000011
Actinomycetota
Gryllotalpicola ginsengisoli DSM 22003 [AULK]
27539
27465
-
Pro
GGG
[ENA]
¡û
>W131235585
AULS01000003
Actinomycetota
Microbacterium luticocti DSM 19459 [AULS]
215053
214979
-
Pro
GGG
[ENA]
¡û
>W141039297
ALWX01000036
Actinomycetota
Janibacter hoylei PVAS-1 [ALWX]
28539
28613
+
Pro
GGG
[ENA]
¡û
>WENV181385082
OFRI01032030
[OFRI] wastewater metagenome; Exp Tend VB 90WW
475
401
-
Pro
GGG
[ENA]
¢þ
>W141188383
AYMR01000001
Actinomycetota
Leifsonia aquatica H1aii [AYMR]
76833
76759
-
Pro
GGG
[ENA]
¡û
>WENV182642223
OJLL01006819
[OJLL] metagenome; surface
157
231
+
Pro
GGG
[ENA]
¢þ
>W141279357
JAGG01000001
Actinomycetota
Microbacterium sp. KROCY2 [JAGG]
1669337
1669413
+
Pro
GGG
[ENA]
¡û
>WENV170726703
LSQX01390759
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2405
2331
-
Pro
GGG
[ENA]
¢þ
>C191026881
CP024170
Actinomycetota
Microbacterium sp. Y-01 [CP024170]
2471653
2471579
-
Pro
GGG
-
¡û
>C191092352
CP032624
Actinomycetota
Gryllotalpicola protaetiae 2DFW10M-5 [CP032624]
2949514
2949588
+
Pro
GGG
-
¡û
>C191092524
CP032630
Actinomycetota
Protaetiibacter intestinalis 2DFWR-13 [CP032630]
3032787
3032713
-
Pro
GGG
-
¡û
>C191144042
CP035494
Actinomycetota
Microbacterium protaetiae DFW100M-13 [CP035494]
54152
54078
-
Pro
GGG
-
¡û
>C191158627
CP038256
Actinomycetota
Microbacterium sediminis YLB-01 [CP038256]
1907420
1907346
-
Pro
GGG
-
¡û
>W1910182605
BJNA01000038
Actinomycetota
Microbacterium lacticum NBRC 14135 [BJNA]
23126
23200
+
Pro
GGG
[ENA]
¡û
>W1910184024
BJOG01000004
Actinomycetota
Microbacterium oxydans NBRC 15586 [BJOG]
20453
20527
+
Pro
GGG
[ENA]
¡û
>W1910377652
FUKO01000029
Actinomycetota
Microbacterium esteraromaticum B Mb 05.01 [FUKO]
21524
21598
+
Pro
GGG
[ENA]
¡û
>W1910377776
FUKR01000024
Actinomycetota
Mycetocola reblochoni REB411 [FUKR]
24804
24878
+
Pro
GGG
[ENA]
¡û
>W1910575846
JRNY01000007
Actinomycetota
Microbacterium sediminis YLB-01 [JRNY]
144341
144267
-
Pro
GGG
[ENA]
¡û
>W1910832070
MYFP01000046
Actinomycetota
Microbacterium sp. MEC084 [MYFP]
2290
2214
-
Pro
GGG
[ENA]
¡û
>W1911075299
NMUM01000037
Actinomycetota
Microbacterium lacus SDZm4 [NMUM]
37498
37424
-
Pro
GGG
[ENA]
¡û
>W1911075322
NMUN01000004
Actinomycetota
Microbacterium sp. BR1 [NMUN]
1074929
1074855
-
Pro
GGG
[ENA]
¡û
>W1911076598
NMVQ01000010
Actinomycetota
Enemella dayhoffiae NML 130396 [NMVQ]
44739
44665
-
Pro
GGG
[ENA]
¡û
>W1911580874
PENI01000016
Actinomycetota
Streptomyces shenzhenensis 193 [PENI]
126450
126524
+
Pro
GGG
[ENA]
¡û
>W1911584630
PIPF01000007
Actinomycetota
Janibacter hoylei PVAS-1 [PIPF]
113259
113333
+
Pro
GGG
[ENA]
¡û
>W1911595649
PNGM01000016
Actinomycetota
Micrococcus luteus UMB0189 [PNGM]
13389
13315
-
Pro
GGG
[ENA]
¡û
>W1810058204
PDJG01000001
Actinomycetota
Sanguibacter antarcticus DSM 18966 [PDJG]
1210231
1210157
-
Pro
GGG
[ENA]
¡û
>W1810064603
PDVO02000022
Actinomycetota
Microbacterium esteraromaticum MM1 [PDVO]
21080
21154
+
Pro
GGG
[ENA]
¡û
>W1810190328
PKJT01000015
Actinomycetota
Micrococcus luteus UMB0038 [PKJT]
20600
20526
-
Pro
GGG
[ENA]
¡û
>W1810196762
PNEY01000010
Actinomycetota
Microbacterium suaedae YZGP509 [PNEY]
22826
22900
+
Pro
GGG
[ENA]
¡û
>W1810196806
PNEZ01000021
Actinomycetota
Microbacterium halophytorum YZYP518 [PNEZ]
29765
29839
+
Pro
GGG
[ENA]
¡û
>W1810196852
PNFA01000013
Actinomycetota
Microbacterium halophytorum YJYP303 [PNFA]
29765
29839
+
Pro
GGG
[ENA]
¡û
>W1810196952
PNFD01000006
Actinomycetota
Microbacterium suaedae YZYP306 [PNFD]
22826
22900
+
Pro
GGG
[ENA]
¡û
>W1810248581
PQBR01000006
Actinomycetota
Microbacterium sp. CJ77 [PQBR]
767110
767184
+
Pro
GGG
[ENA]
¡û
>W1810278594
PSUW01000006
Actinomycetota
Rathayibacter sp. AY1G9 [PSUW]
162043
161969
-
Pro
GGG
[ENA]
¡û
>W1810281931
PSXV01000004
Actinomycetota
Rathayibacter sp. AY1A1 [PSXV]
15106
15180
+
Pro
GGG
[ENA]
¡û
>W1810744363
QOUI01000001
Actinomycetota
Desertihabitans brevis 16Sb5-5 [QOUI]
373961
374035
+
Pro
GGG
[ENA]
¡û
>W1810861625
QTTZ01000001
Actinomycetota
Microbacterium trichothecenolyticum ZKA46 [QTTZ]
1040913
1040837
-
Pro
GGG
[ENA]
¡û
>W1810912308
QVLP01000016
Actinomycetota
Microbacterium halotolerans YIM 70130 [QVLP]
24822
24896
+
Pro
GGG
[ENA]
¡û
>W1810917683
QWBV01000034
Actinomycetota
Leucobacter sp. wl10 [QWBV]
17009
17083
+
Pro
GGG
[ENA]
¡û
>W1810917685
QWBV01000043
Actinomycetota
Leucobacter sp. wl10 [QWBV]
13724
13798
+
Pro
GGG
[ENA]
¡û
>C151095265
CP012507
Actinomycetota
Kocuria palustris MU14/1 [CP012507]
1747406
1747330
-
Pro
GGG
-
¡û
>W10128177
AEGE01001589
Actinomycetota
Pseudonocardia sp. P2 [AEGE]
1965
1891
-
Pro
GGG
[ENA]
¡û
>W1511008758
JHBX01000078
Actinomycetota
Leucobacter japonicus CBX130 [JHBX]
39236
39312
+
Pro
GGG
[ENA]
¡û
>W11136866
AEGE01001589
Actinomycetota
Pseudonocardia sp. P2 [AEGE]
1965
1891
-
Pro
GGG
[ENA]
¡û
>W1511528981
JYJA01000034
Actinomycetota
Microbacterium trichothecenolyticum DSM 8608 [JYJA]
199270
199196
-
Pro
GGG
[ENA]
¡û
>W11178064
AGCW01000013
Actinomycetota
Leucobacter chromiiresistens JG 31 [AGCW]
80116
80042
-
Pro
GGG
[ENA]
¡û
>C161043620
CP012697
Actinomycetota
Microbacterium sp. No. 7 [CP012697]
2957992
2957918
-
Pro
GGG
[Ensembl]
¡û
>W1610068057
BCRA01000024
Actinomycetota
Microbacterium resistens NBRC 103078 [BCRA]
24707
24781
+
Pro
GGG
[ENA]
¡û
>W1610074019
BCWI01000023
Actinomycetota
Microbacterium hominis NBRC 15708 [BCWI]
22155
22229
+
Pro
GGG
[ENA]
¡û
>W121061285
AJGR01000517
Actinomycetota
Microbacterium laevaniformans OR221 [AJGR]
4209
4133
-
Pro
GGG
[ENA]
¡û
>W1610112215
CZJR01000066
Actinomycetota
Kocuria palustris [CZJR]
1948
1874
-
Pro
GGG
[ENA]
¡û
>W1610112225
CZJS01000079
Actinomycetota
Pseudoclavibacter helvolus [CZJS]
171323
171249
-
Pro
GGG
[ENA]
¡û
>W1610112546
CZJY01000065
Actinomycetota
Pseudoclavibacter helvolus [CZJY]
88466
88540
+
Pro
GGG
[ENA]
¡û
>W1610590736
LDRQ01000058
Actinomycetota
Microbacterium oxydans [LDRQ]
3932
3858
-
Pro
GGG
[ENA]
¡û
>W1610725235
LMER01000014
Actinomycetota
Angustibacter sp. Root456 [LMER]
40653
40577
-
Pro
GGG
[ENA]
¡û
>W1610726538
LMFR01000013
Actinomycetota
Microbacterium sp. Root53 [LMFR]
702
626
-
Pro
GGG
[ENA]
¡û
>W1610727910
LMGU01000001
Actinomycetota
Microbacterium sp. Root61 [LMGU]
17174
17248
+
Pro
GGG
[ENA]
¡û
>W1610851016
LQBJ01000007
Actinomycetota
Kocuria palustris [LQBJ]
42156
42230
+
Pro
GGG
[ENA]
¡û
>W1610902104
LRYC01000062
Actinomycetota
Microbacterium hominis [LRYC]
47544
47470
-
Pro
GGG
[ENA]
¡û
>W1610981937
LWCU01000003
Actinomycetota
Microbacterium sp. H83 [LWCU]
26816
26890
+
Pro
GGG
[ENA]
¡û
>W1611001420
LXMD01000027
Actinomycetota
Microbacterium sediminis [LXMD]
143924
143850
-
Pro
GGG
[ENA]
¡û
>W1710065430
BCRA01000024
Actinomycetota
Microbacterium resistens NBRC 103078 [BCRA]
24707
24781
+
Pro
GGG
[ENA]
¡û
>W1710071137
BCWI01000023
Actinomycetota
Microbacterium hominis NBRC 15708 [BCWI]
22155
22229
+
Pro
GGG
[ENA]
¡û
>W1710114919
CZJR01000066
Actinomycetota
Kocuria palustris [CZJR]
1948
1874
-
Pro
GGG
[ENA]
¡û
>W1710114929
CZJS01000079
Actinomycetota
Pseudoclavibacter helvolus [CZJS]
171323
171249
-
Pro
GGG
[ENA]
¡û
>W1710115250
CZJY01000065
Actinomycetota
Pseudoclavibacter helvolus [CZJY]
88466
88540
+
Pro
GGG
[ENA]
¡û
>W1710518064
FNDT01000024
Actinomycetota
Arthrobacter subterraneus [FNDT]
10965
10891
-
Pro
GGG
[ENA]
¡û
>W1710526117
FNKB01000001
Actinomycetota
Leucobacter chromiiresistens [FNKB]
1463289
1463363
+
Pro
GGG
[ENA]
¡û
>W1710622274
JNVR01000136
Actinomycetota
Rhodococcus rhodochrous [JNVR]
873
947
+
Pro
GGG
[ENA]
¡û
>W1710710016
LDRQ01000058
Actinomycetota
Microbacterium oxydans [LDRQ]
3932
3858
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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