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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.27695 (255 seq.)
>W1710785552
LJHY01000022
Alphaproteobacteria
Novosphingobium sp. AAP83 [LJHY]
238664
238753
+
Ser
TGA
[ENA]
¡û
>W1710856786
LLZQ01000001
Alphaproteobacteria
Novosphingobium sp. FSW06-99 [LLZQ]
342845
342934
+
Ser
TGA
[ENA]
¡û
>W1710856905
LLZS01000007
Alphaproteobacteria
Novosphingobium fuchskuhlense [LLZS]
590086
590175
+
Ser
TGA
[ENA]
¡û
>W1710858209
LMAU01000002
Alphaproteobacteria
Tsuneonella troitsensis [LMAU]
166975
167064
+
Ser
TGA
[ENA]
¡û
>W1710864888
LMGF01000005
Alphaproteobacteria
Sphingopyxis sp. Root1497 [LMGF]
1494501
1494590
+
Ser
TGA
[ENA]
¡û
>W1710865024
LMGI01000003
Alphaproteobacteria
Sphingopyxis sp. Root154 [LMGI]
533100
533189
+
Ser
TGA
[ENA]
¡û
>W1710867434
LMIG01000005
Alphaproteobacteria
Sphingopyxis sp. Root214 [LMIG]
532942
533031
+
Ser
TGA
[ENA]
¡û
>W1710894033
LNFI01000008
Alphaproteobacteria
Sphingomonadales bacterium Ga0077557 [LNFI]
31315
31226
-
Ser
TGA
[ENA]
¡û
>W1710912525
LNRR01000006
Alphaproteobacteria
Sphingopyxis sp. H005 [LNRR]
397200
397111
-
Ser
TGA
[ENA]
¡û
>W1710912571
LNRS01000005
Alphaproteobacteria
Sphingopyxis sp. H012 [LNRS]
396751
396662
-
Ser
TGA
[ENA]
¡û
>W1710912619
LNRT01000009
Alphaproteobacteria
Sphingopyxis sp. H038 [LNRT]
8499
8588
+
Ser
TGA
[ENA]
¡û
>W1710912661
LNRU01000006
Alphaproteobacteria
Sphingopyxis sp. H053 [LNRU]
427635
427546
-
Ser
TGA
[ENA]
¡û
>W1710912712
LNRV01000016
Alphaproteobacteria
Sphingopyxis sp. H077 [LNRV]
135204
135115
-
Ser
TGA
[ENA]
¡û
>W1710912767
LNRW01000051
Alphaproteobacteria
Sphingopyxis sp. H080 [LNRW]
8499
8588
+
Ser
TGA
[ENA]
¡û
>W1710912812
LNRX01000047
Alphaproteobacteria
Sphingopyxis sp. H085 [LNRX]
8499
8588
+
Ser
TGA
[ENA]
¡û
>W1710912821
LNRY01000003
Alphaproteobacteria
Sphingopyxis sp. H093 [LNRY]
397160
397071
-
Ser
TGA
[ENA]
¡û
>W1710912868
LNRZ01000002
Alphaproteobacteria
Sphingopyxis sp. H050 [LNRZ]
393478
393567
+
Ser
TGA
[ENA]
¡û
>W1710912906
LNSA01000001
Alphaproteobacteria
Sphingopyxis sp. H115 [LNSA]
112566
112655
+
Ser
TGA
[ENA]
¡û
>W1710913369
LNSK01000002
Alphaproteobacteria
Sphingopyxis sp. A083 [LNSK]
459793
459882
+
Ser
TGA
[ENA]
¡û
>W1711072926
LSIA01000315
Alphaproteobacteria
Novosphingobium sp. CCH12-A3 [LSIA]
31132
31043
-
Ser
TGA
[ENA]
¡û
>W1711073273
LSIJ01000092
Alphaproteobacteria
Sphingomonas sp. CCH10-B3 [LSIJ]
44779
44690
-
Ser
TGA
[ENA]
¡û
>W1711127858
LURA01000079
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S22_B5 [LURA]
297
386
+
Ser
TGA
[ENA]
¡û
>W1711127875
LURB01000010
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S23_B6 [LURB]
53083
53172
+
Ser
TGA
[ENA]
¡û
>W1711127912
LURC01000056
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S24_B7 [LURC]
3123
3034
-
Ser
TGA
[ENA]
¡û
>W1711127967
LURE01000039
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S29_B3 [LURE]
12403
12492
+
Ser
TGA
[ENA]
¡û
>W1711127971
LURF01000055
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S34_B10 [LURF]
2054
1965
-
Ser
TGA
[ENA]
¡û
>W1711128006
LURG01000316
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S38_B16 [LURG]
81
170
+
Ser
TGA
[ENA]
¡û
>W1711128020
LURH01000005
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S40_B6 [LURH]
6541
6452
-
Ser
TGA
[ENA]
¡û
>W1711128070
LURI01000004
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S42_B3 [LURI]
974068
973979
-
Ser
TGA
[ENA]
¡û
>W1711259779
LYVN01000033
Alphaproteobacteria
Sphingopyxis sp. KK2 [LYVN]
29505
29416
-
Ser
TGA
[ENA]
¡û
>W1711386411
MEFH01000056
Alphaproteobacteria
Sphingopyxis sp. SCN 67-31 [MEFH]
5641
5552
-
Ser
TGA
[ENA]
¡û
>W1711387012
MEGC01000029
Alphaproteobacteria
Novosphingobium sp. SCN 63-17 [MEGC]
32755
32666
-
Ser
TGA
[ENA]
¡û
>W1711387053
MEGD01000028
Alphaproteobacteria
Novosphingobium sp. SCN 66-18 [MEGD]
3719
3630
-
Ser
TGA
[ENA]
¡û
>W1711505619
MKVS01000008
Alphaproteobacteria
Novosphingobium sp. 63-713 [MKVS]
10998
11087
+
Ser
TGA
[ENA]
¡û
>W1711705045
MSQB01000023
Alphaproteobacteria
Novosphingobium panipatense [MSQB]
77681
77770
+
Ser
TGA
[ENA]
¡û
>W1711793286
MWLM01000064
Alphaproteobacteria
Novosphingobium sp. B 225 [MWLM]
373549
373638
+
Ser
TGA
[ENA]
¡û
>W1712105764
NISJ01000001
Alphaproteobacteria
Sphingopyxis witflariensis [NISJ]
5447
5358
-
Ser
TGA
[ENA]
¡û
>C171056596
CP017075
Alphaproteobacteria
Novosphingobium resinovorum SA1 [CP017075]
925449
925360
-
Ser
TGA
-
¡û
>C171128437
LT598653
Alphaproteobacteria
uncultured Sphingopyxis sp. [LT598653]
2054588
2054499
-
Ser
TGA
-
¡û
>W131160206
AQWK01000002
Alphaproteobacteria
Novosphingobium nitrogenifigens DSM 19370 [AQWK]
262703
262792
+
Ser
TGA
[ENA]
¡û
>C014688
CP000248
Alphaproteobacteria
Novosphingobium aromaticivorans DSM 12444 [CP000248]
2060462
2060551
+
Ser
TGA
[Ensembl]
¡û
>C019757
CP000356
Alphaproteobacteria
Sphingopyxis alaskensis RB2256 [CP000356]
1306597
1306508
-
Ser
TGA
[Ensembl]
¡û
>WENV180020136
FTCV01002314
[FTCV] metagenome; soil
7810
7721
-
Ser
TGA
[ENA]
¡û
>WENV180099470
NMRC01006994
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
281
192
-
Ser
TGA
[ENA]
¡û
>WENV180267856
OBEQ011902521
[OBEQ] groundwater metagenome; groundwater
239
328
+
Ser
TGA
[ENA]
¡û
>WENV180284802
OBID01119600
[OBID] metagenome; sludge
260
171
-
Ser
TGA
[ENA]
¡û
>WENV180593963
OCOY01006970
[OCOY] marine metagenome; ENVO:00002010
121
32
-
Ser
TGA
[ENA]
¡û
>W141077938
ATHL01000028
Alphaproteobacteria
Novosphingobium lindaniclasticum LE124 [ATHL]
108966
108877
-
Ser
TGA
[ENA]
¡û
>WENV181167820
OEIU01081020
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
350
439
+
Ser
TGA
[ENA]
¡û
>WENV181191288
OEPS010051320
[OEPS] soil metagenome; soil
611
700
+
Ser
TGA
[ENA]
¡û
>WENV181226665
OFDN01000001
[OFDN] hot springs metagenome; Water
1194887
1194798
-
Ser
TGA
[ENA]
¡û
>WENV181227846
OFDN01058452
[OFDN] hot springs metagenome; Water
579
490
-
Ser
TGA
[ENA]
¡û
>WENV181384983
OFRI01024428
[OFRI] wastewater metagenome; Exp Tend VB 90WW
706
617
-
Ser
TGA
[ENA]
¡û
>WENV181402349
OFTY01000743
[OFTY] sludge metagenome; sludge
15082
15170
+
Ser
TGA
[ENA]
¡û
>WENV181840103
OGVO01041807
[OGVO] freshwater metagenome; freshwater
199
110
-
Ser
TGA
[ENA]
¡û
>WENV183726723
PJTO01000106
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
25469
25380
-
Ser
TGA
[ENA]
¡û
>WENV183727853
PJTP01001299
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
194
105
-
Ser
TGA
[ENA]
¡û
>WENV170010264
APMI01012003
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
9697
9608
-
Ser
TGA
[ENA]
¡û
>WENV170011159
APMI01046685
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
221
132
-
Ser
TGA
[ENA]
¡û
>WENV170556778
CXWL01013546
[CXWL] groundwater metagenome; biofilm material
21725
21636
-
Ser
TGA
[ENA]
¡û
>WENV170577557
FSSH01000179
[FSSH] freshwater metagenome; drinking water
63534
63445
-
Ser
TGA
[ENA]
¡û
>WENV170708342
LNAP01071503
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
895
984
+
Ser
TGA
[ENA]
¡û
>WENV170709321
LNFM01000257
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
249238
249327
+
Ser
TGA
[ENA]
¡û
>WENV170711495
LNFM01005523
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
90
1
-
Ser
TGA
[ENA]
¡û
>WENV170713931
LNFM01047050
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3059
2970
-
Ser
TGA
[ENA]
¡û
>WENV170728790
LULF01000749
[LULF] marine metagenome; Red Sea water column Station 169 - depth 500m
66
155
+
Ser
TGA
[ENA]
¡û
>WENV170732476
LULJ01000026
[LULJ] marine metagenome; Red Sea water column Station 169 - depth 25m
254023
254112
+
Ser
TGA
[ENA]
¡û
>WENV170735491
LULL01002692
[LULL] marine metagenome; Red Sea water column Station 149 - depth 500m
1842
1753
-
Ser
TGA
[ENA]
¡û
>WENV170737682
LULO01001576
[LULO] marine metagenome; Red Sea water column Station 149 - depth 50m
21521
21610
+
Ser
TGA
[ENA]
¡û
>WENV170738340
LULP01000011
[LULP] marine metagenome; Red Sea water column Station 149 - depth 25m
12403
12492
+
Ser
TGA
[ENA]
¡û
>WENV170739534
LULQ01002888
[LULQ] marine metagenome; Red Sea water column Station 149 - depth 10m
1541
1452
-
Ser
TGA
[ENA]
¡û
>WENV170742132
LULU01001790
[LULU] marine metagenome; Red Sea water column Station 108 - depth 50m
3123
3034
-
Ser
TGA
[ENA]
¡û
>WENV170743468
LULW01000132
[LULW] marine metagenome; Red Sea water column Station 108 - depth 10m
297
386
+
Ser
TGA
[ENA]
¡û
>WENV170759521
LUMT01000002
[LUMT] marine metagenome; Red Sea water column Station 192 - depth 50m
974068
973979
-
Ser
TGA
[ENA]
¡û
>WENV170762437
LUMW01008529
[LUMW] marine metagenome; Red Sea water column Station 192 - depth 500m
905
816
-
Ser
TGA
[ENA]
¡û
>WENV170973411
MTKY01037443
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2110
2021
-
Ser
TGA
[ENA]
¡û
>WENV171003067
NKIC01008384
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
34
123
+
Ser
TGA
[ENA]
¡û
>W141484964
JFYZ01000066
Alphaproteobacteria
Novosphingobium resinovorum [JFYZ]
31648
31559
-
Ser
TGA
[ENA]
¡û
>C181133089
CP026381
Alphaproteobacteria
Sphingopyxis sp. MG [CP026381]
1699652
1699563
-
Ser
TGA
-
¡û
>C181192066
CP030352
Alphaproteobacteria
Novosphingobium sp. P6W [CP030352, CP030353]
1922649
1922560
-
Ser
TGA
-
¡û
>C191000351
AP017603
Alphaproteobacteria
Sphingopyxis sp. EG6 [AP017603]
1396154
1396243
+
Ser
TGA
-
¡û
>C191000591
AP017898
Alphaproteobacteria
Sphingopyxis sp. FD7 [AP017898]
1248931
1248842
-
Ser
TGA
-
¡û
>C191057052
CP028347
Alphaproteobacteria
Novosphingobium sp. THN1 [CP028347]
2681368
2681279
-
Ser
TGA
-
¡û
>W09100323
AAAV03000004
Alphaproteobacteria
Novosphingobium aromaticivorans DSM 12444 [AAAV]
414724
414635
-
Ser
TGA
[ENA]
¡û
>W09102968
AAIP01000013
Alphaproteobacteria
Sphingopyxis alaskensis RB2256 [AAIP]
105731
105820
+
Ser
TGA
[ENA]
¡û
>C191095153
CP032829
Alphaproteobacteria
Sphingomonas paeninsulae YZ-8 [CP032829]
200030
199941
-
Ser
TGA
-
¡û
>C191163798
CP039250
Alphaproteobacteria
Sphingopyxis sp. PAMC25046 [CP039250]
2290632
2290721
+
Ser
TGA
-
¡û
>C191170992
CP039695
Alphaproteobacteria
Novosphingobium sp. EMRT-2 [CP039695]
393734
393645
-
Ser
TGA
-
¡û
>W1910231955
FPEH01000015
Alphaproteobacteria
Novosphingobium sp. NDB2Meth1 [FPEH]
516009
516098
+
Ser
TGA
[ENA]
¡û
>W1910501786
FYAT01000017
Alphaproteobacteria
Sphingopyxis sp. P1IMeth2 [FYAT]
193454
193543
+
Ser
TGA
[ENA]
¡û
>W1910651508
LYMM01000030
Alphaproteobacteria
Novosphingobium guangzhouense SA925 [LYMM]
28232
28321
+
Ser
TGA
[ENA]
¡û
>W1910744343
MIAL01000016
Alphaproteobacteria
Sphingopyxis sp. RIFCSPHIGHO2_01_FULL_65_24 [MIAL]
325668
325757
+
Ser
TGA
[ENA]
¡û
>W1910934272
NIWD01000016
Alphaproteobacteria
Sphingopyxis sp. GW247-27LB [NIWD]
2691
2603
-
Ser
TGA
[ENA]
¡û
>W1911411562
NWUR01000001
Alphaproteobacteria
Sphingopyxis ummariensis DSM 24316 [NWUR]
12942
12853
-
Ser
TGA
[ENA]
¡û
>W1911737883
QTTB01000004
Alphaproteobacteria
Altererythrobacter troitsensis KMM 6042 [QTTB]
940932
941021
+
Ser
TGA
[ENA]
¡û
>W1911752783
QWLV01000009
Alphaproteobacteria
Sphingomonas sp. ZDH117 [QWLV]
137679
137768
+
Ser
TGA
[ENA]
¡û
>W1911802703
QYUM01000003
Alphaproteobacteria
Sphingomonas sp. K2R01-6 [QYUM]
1198063
1197974
-
Ser
TGA
[ENA]
¡û
>W1810107946
PHFW01000001
Alphaproteobacteria
Sphingopyxis lindanitolerans WS5A3p [PHFW]
230094
230183
+
Ser
TGA
[ENA]
¡û
>W1810121212
PHUF01000002
Alphaproteobacteria
Novosphingobium kunmingense CGMCC 1.12274 [PHUF]
685925
685836
-
Ser
TGA
[ENA]
¡û
>W1810195669
PKRT01000001
Alphaproteobacteria
Novosphingobium sp. TH158 [PKRT]
466256
466345
+
Ser
TGA
[ENA]
¡û
>W1810239625
PPSM01000036
Alphaproteobacteria
Novosphingobium sp. HII-3 [PPSM]
116299
116388
+
Ser
TGA
[ENA]
¡û
>C151044376
CP009122
Alphaproteobacteria
Sphingopyxis fribergensis Kp5.2 [CP009122]
1845647
1845736
+
Ser
TGA
[Ensembl]
¡û
>C151048351
CP009291
Alphaproteobacteria
Novosphingobium pentaromativorans US6-1 [CP009291]
779278
779367
+
Ser
TGA
[Ensembl]
¡û
>W2010104470
BJYR01000002
Alphaproteobacteria
Novosphingobium sediminis NBRC 106119 [BJYR]
28805
28894
+
Ser
TGA
[ENA]
¡û
>W2010137867
BLJH01000052
Alphaproteobacteria
Novosphingobium sp. TCA1 [BLJH]
8838
8749
-
Ser
TGA
[ENA]
¡û
>W2010385498
FPEH01000015
Alphaproteobacteria
Novosphingobium sp. NDB2Meth1 [FPEH]
516009
516098
+
Ser
TGA
[ENA]
¡û
>W2010421518
FYAT01000017
Alphaproteobacteria
Sphingopyxis sp. P1IMeth2 [FYAT]
193454
193543
+
Ser
TGA
[ENA]
¡û
>W2010438031
JAAAPO010000002
Alphaproteobacteria
Novosphingobium sp. FSY-8 [JAAAPO]
554686
554775
+
Ser
TGA
[ENA]
¡û
>W2010559911
JAASQN010000002
Alphaproteobacteria
Sphingopyxis panaciterrae DSM 27164 [JAASQN]
42481
42392
-
Ser
TGA
[ENA]
¡û
>W2010566972
JAATIT010000002
Alphaproteobacteria
Sphingopyxis italica DSM 25229 [JAATIT]
311414
311503
+
Ser
TGA
[ENA]
¡û
>W2010581590
JAAZQL010000006
Alphaproteobacteria
Novosphingobium sp. SG707 [JAAZQL]
326392
326303
-
Ser
TGA
[ENA]
¡û
>W2010585585
JABAID010000002
Alphaproteobacteria
Novosphingobium sp. ERN07 [JABAID]
130030
130119
+
Ser
TGA
[ENA]
¡û
>W2010602505
JABGCB010000028
Alphaproteobacteria
Novosphingobium sp. SG751A [JABGCB]
8421
8332
-
Ser
TGA
[ENA]
¡û
>W2010672312
JACCCJ010000001
Alphaproteobacteria
Sphingopyxis sp. JAI108 [JACCCJ]
1813367
1813456
+
Ser
TGA
[ENA]
¡û
>W2010679883
JACDUG010000001
Alphaproteobacteria
Sphingobium sp. B10D3C [JACDUG]
1722816
1722905
+
Ser
TGA
[ENA]
¡û
>W2010696719
JACHDA010000001
Alphaproteobacteria
Sphingopyxis sp. JAI128 [JACHDA]
252506
252417
-
Ser
TGA
[ENA]
¡û
>W2010697979
JACHDX010000001
Alphaproteobacteria
Sphingobium sp. B10D7A [JACHDX]
18534
18623
+
Ser
TGA
[ENA]
¡û
>W2010712000
JACHOA010000003
Alphaproteobacteria
Novosphingobium taihuense DSM 17507 [JACHOA]
528866
528955
+
Ser
TGA
[ENA]
¡û
>W2010723897
JACICY010000005
Alphaproteobacteria
Novosphingobium hassiacum DSM 14552 [JACICY]
228193
228104
-
Ser
TGA
[ENA]
¡û
>W2010725185
JACIDX010000029
Alphaproteobacteria
Novosphingobium sediminicola DSM 27057 [JACIDX]
1395
1306
-
Ser
TGA
[ENA]
¡û
>W2010725221
JACIDY010000007
Alphaproteobacteria
Novosphingobium fluoreni DSM 27568 [JACIDY]
82587
82498
-
Ser
TGA
[ENA]
¡û
>W2010725299
JACIEA010000001
Alphaproteobacteria
Sphingorhabdus rigui DSM 29050 [JACIEA]
1194020
1193931
-
Ser
TGA
[ENA]
¡û
>W2010731513
JACIJC010000005
Alphaproteobacteria
Sphingobium boeckii DSM 25079 [JACIJC]
408346
408435
+
Ser
TGA
[ENA]
¡û
>W2010731748
JACIJH010000013
Alphaproteobacteria
Sphingopyxis panaciterrulae DSM 27163 [JACIJH]
108829
108918
+
Ser
TGA
[ENA]
¡û
>W2010732077
JACIJP010000001
Alphaproteobacteria
Sphingobium subterraneum DSM 102255 [JACIJP]
292359
292448
+
Ser
TGA
[ENA]
¡û
>W2010746001
JACLAU010000014
Alphaproteobacteria
Novosphingobium flavum 4Y4 [JACLAU]
8620
8709
+
Ser
TGA
[ENA]
¡û
>W2010746066
JACLAV010000057
Alphaproteobacteria
Novosphingobium flavum 4Y9 [JACLAV]
3265
3176
-
Ser
TGA
[ENA]
¡û
>W2010746101
JACLAW010000009
Alphaproteobacteria
Novosphingobium flavum NBRC 111647 [JACLAW]
181363
181452
+
Ser
TGA
[ENA]
¡û
>W2010746143
JACLAX010000008
Alphaproteobacteria
Novosphingobium piscinae KCTC 42194 [JACLAX]
116479
116390
-
Ser
TGA
[ENA]
¡û
>W2010796743
LYMM01000030
Alphaproteobacteria
Novosphingobium guangzhouense SA925 [LYMM]
28232
28321
+
Ser
TGA
[ENA]
¡û
>W2010877775
MIAL01000016
Alphaproteobacteria
Sphingopyxis sp. RIFCSPHIGHO2_01_FULL_65_24 [MIAL]
325668
325757
+
Ser
TGA
[ENA]
¡û
>W2010982476
NIWD01000016
Alphaproteobacteria
Sphingopyxis sp. GW247-27LB [NIWD]
2691
2603
-
Ser
TGA
[ENA]
¡û
>W2011138009
NWUR01000001
Alphaproteobacteria
Sphingopyxis ummariensis DSM 24316 [NWUR]
12942
12853
-
Ser
TGA
[ENA]
¡û
>W2011303329
QTTB01000004
Alphaproteobacteria
Altererythrobacter troitsensis KMM 6042 [QTTB]
940932
941021
+
Ser
TGA
[ENA]
¡û
>W2011305420
QUOQ01000003
Alphaproteobacteria
Brevundimonas sp. NS26 [QUOQ]
147454
147543
+
Ser
TGA
[ENA]
¡û
>W2011344334
QYUM01000003
Alphaproteobacteria
Sphingomonas sp. K2R01-6 [QYUM]
1198063
1197974
-
Ser
TGA
[ENA]
¡û
>W2011467859
RPLL01000016
Alphaproteobacteria
Sinorhizobium meliloti USDA1325 [RPLL]
51874
51785
-
Ser
TGA
[ENA]
¡û
>W2011467894
RPLM01000001
Alphaproteobacteria
Sinorhizobium meliloti USDA1320 [RPLM]
51402
51313
-
Ser
TGA
[ENA]
¡û
>W2011479690
RQSI01000001
Alphaproteobacteria
Novosphingobium sp. LASN5T [RQSI]
139851
139762
-
Ser
TGA
[ENA]
¡û
>W2011481514
RQWJ01000004
Alphaproteobacteria
Brevundimonas sp. LA-55 [RQWJ]
357299
357210
-
Ser
TGA
[ENA]
¡û
>W2011493841
RWJI01000001
Alphaproteobacteria
Sphingorhabdus wooponensis 03SU3-P [RWJI]
935747
935836
+
Ser
TGA
[ENA]
¡û
>W2011538172
SCMU01000010
Alphaproteobacteria
Sphingopyxis sp. 2PD [SCMU]
27813
27902
+
Ser
TGA
[ENA]
¡û
>W2011539297
SCNQ01000041
Alphaproteobacteria
Sphingomonadaceae bacterium 3R27B10 [SCNQ]
16143
16232
+
Ser
TGA
[ENA]
¡û
>W2011539375
SCNS01000001
Alphaproteobacteria
Sphingomonadaceae bacterium 3R27C6 [SCNS]
491539
491628
+
Ser
TGA
[ENA]
¡û
>W2011539426
SCNT01000006
Alphaproteobacteria
Sphingomonadaceae bacterium 3R27E2-A [SCNT]
27028
27117
+
Ser
TGA
[ENA]
¡û
>W2011540805
SCOT01000003
Alphaproteobacteria
Sphingopyxis sp. L1A2A [SCOT]
176854
176765
-
Ser
TGA
[ENA]
¡û
>W2011553218
SDWJ01000001
Alphaproteobacteria
Sphingorhabdus profundilacus IMCC26285 [SDWJ]
952053
952142
+
Ser
TGA
[ENA]
¡û
>W2011619507
SLVB01000001
Alphaproteobacteria
Novosphingobium sp. PhB165 [SLVB]
820083
819994
-
Ser
TGA
[ENA]
¡û
>W2011619594
SLVC01000022
Alphaproteobacteria
Novosphingobium sp. ST904 [SLVC]
65470
65559
+
Ser
TGA
[ENA]
¡û
>W2011629448
SMBO01000001
Alphaproteobacteria
Novosphingobium sp. PhB57 [SMBO]
830130
830041
-
Ser
TGA
[ENA]
¡û
>W2011657969
SODQ01000001
Alphaproteobacteria
Novosphingobium sp. PhB55 [SODQ]
406799
406710
-
Ser
TGA
[ENA]
¡û
>W2012047663
VIVX01000015
Alphaproteobacteria
Novosphingobium barchaimii 1192 [VIVX]
126719
126808
+
Ser
TGA
[ENA]
¡û
>W2012071347
VKKU01000001
Alphaproteobacteria
Sphingorhabdus contaminans KCTC32445 [VKKU]
943266
943177
-
Ser
TGA
[ENA]
¡û
>W2012439740
WTZA01000001
Alphaproteobacteria
Altererythrobacter aerius 100921-2 [WTZA]
474797
474708
-
Ser
TGA
[ENA]
¡û
>W2012468424
WVTD01000005
Alphaproteobacteria
Novosphingobium sp. FGD1 [WVTD]
181818
181729
-
Ser
TGA
[ENA]
¡û
>W2110025179
BMHK01000008
Alphaproteobacteria
Novosphingobium endophyticum CGMCC 1.15095 [BMHK]
82660
82571
-
Ser
TGA
[ENA]
¡û
>W2110190471
JABVZR010000001
Alphaproteobacteria
Novosphingobium sp. GeG2 [JABVZR]
1978466
1978377
-
Ser
TGA
[ENA]
¡û
>W2110190631
JABWGQ010000024
Alphaproteobacteria
Sphingopyxis sp. LK2115 [JABWGQ]
213
302
+
Ser
TGA
[ENA]
¡û
>W2110195989
JABXWS010000035
Alphaproteobacteria
Novosphingobium sp. HR1a [JABXWS]
37689
37600
-
Ser
TGA
[ENA]
¡û
>W2110240118
JACNMK010000001
Alphaproteobacteria
Sphingopyxis sp. P8 [JACNMK]
340909
340998
+
Ser
TGA
[ENA]
¡û
>W2110300569
JADBDT010000001
Alphaproteobacteria
Sphingopyxis sp. OAS728 [JADBDT]
330517
330606
+
Ser
TGA
[ENA]
¡û
>W2110330725
JADKYM010000001
Alphaproteobacteria
Sphingopyxis solisilvae R366 [JADKYM]
348349
348438
+
Ser
TGA
[ENA]
¡û
>W2110372036
JADQDC010000002
Alphaproteobacteria
Novosphingobium jiangmenense 1Y9A [JADQDC]
190794
190705
-
Ser
TGA
[ENA]
¡û
>W2110444747
JAERPO010000001
Alphaproteobacteria
Sphingopyxis sp. DHUNG17 [JAERPO]
340040
340129
+
Ser
TGA
[ENA]
¡û
>W2110516552
JAFMTR010000042
Alphaproteobacteria
Sphingopyxis soli BL03 [JAFMTR]
142313
142224
-
Ser
TGA
[ENA]
¡û
>W2110600957
JAHGAW010000001
Alphaproteobacteria
Sphingobium sp. H33 [JAHGAW]
354302
354391
+
Ser
TGA
[ENA]
¡û
>W2110635359
JAHOOZ010000001
Alphaproteobacteria
Novosphingobium sp. G106 [JAHOOZ]
1226338
1226427
+
Ser
TGA
[ENA]
¡û
>W2110683529
JAILXK010000001
Alphaproteobacteria
Sphingopyxis sp. XHP0097 [JAILXK]
1365094
1365005
-
Ser
TGA
[ENA]
¡û
>W2110683622
JAILXZ010000002
Alphaproteobacteria
Novosphingobium sp. c7 [JAILXZ]
206739
206828
+
Ser
TGA
[ENA]
¡û
>W2110683840
JAILYM010000001
Alphaproteobacteria
Novosphingobium sp. c1 [JAILYM]
447535
447624
+
Ser
TGA
[ENA]
¡û
>C201110600
CP042345
Alphaproteobacteria
Novosphingobium ginsenosidimutans FW-6 [CP042345]
2763262
2763351
+
Ser
TGA
-
¡û
>C201257426
CP053015
Alphaproteobacteria
Sphingomonas sp. CSW-10 [CP053015]
2593011
2593100
+
Ser
TGA
-
¡û
>C201261383
CP053346
Alphaproteobacteria
Sphingomonas sp. AP4-R1 [CP053346]
4147281
4147370
+
Ser
TGA
-
¡û
>C211082720
CP050249
Alphaproteobacteria
Sphingopyxis terrae subsp. terrae YC-JH3 [CP050249]
1753817
1753906
+
Ser
TGA
-
¡û
>C211100508
CP054856
Alphaproteobacteria
Novosphingobium sp. 502str22 [CP054856]
415761
415672
-
Ser
TGA
-
¡û
>C211137991
CP060725
Alphaproteobacteria
Sphingopyxis sp. OPL5 [CP060725]
3867201
3867290
+
Ser
TGA
-
¡û
>W2110704942
JAIVLF010000004
Alphaproteobacteria
Novosphingobium profundi EaN21-2 [JAIVLF]
40927
41016
+
Ser
TGA
[ENA]
¡û
>C211177364
CP063445
Alphaproteobacteria
Novosphingobium sp. ES2-1 [CP063445]
1498419
1498508
+
Ser
TGA
-
¡û
>C211181031
CP063839
Alphaproteobacteria
Sphingopyxis granuli RW412 [CP063839]
2690168
2690257
+
Ser
TGA
-
¡û
>W2110710012
JAIZDA010000001
Alphaproteobacteria
Novosphingobium sp. FKTRR1 [JAIZDA]
8537
8626
+
Ser
TGA
[ENA]
¡û
>W1510012855
BBNP01000059
Alphaproteobacteria
Novosphingobium sp. MBES04 [BBNP]
40794
40883
+
Ser
TGA
[ENA]
¡û
>W1510015792
BBRO01000001
Alphaproteobacteria
Sphingopyxis sp. C-1 [BBRO]
2068289
2068200
-
Ser
TGA
[ENA]
¡û
>W1510024412
CCBH010000222
Alphaproteobacteria
Novosphingobium sp. KN65.2 [CCBH]
23922
23833
-
Ser
TGA
[ENA]
¡û
>W2110739839
JAJEWI010000001
Alphaproteobacteria
Sphingopyxis sp. FBM22 [JAJEWI]
294488
294577
+
Ser
TGA
[ENA]
¡û
>C231032174
CP022707
Alphaproteobacteria
Novosphingobium sp. 9 [CP022707, CP022708]
1886167
1886256
+
Ser
TGA
-
¡û
>C231041750
CP033204
Alphaproteobacteria
Sphingopyxis sp. YF1 [CP033204]
1734457
1734546
+
Ser
TGA
-
¡û
>C231196592
CP084712
Alphaproteobacteria
Sphingopyxis sp. USTB-05 [CP084712]
1889419
1889508
+
Ser
TGA
-
¡û
>C231259895
CP089301
Alphaproteobacteria
Novosphingobium sp. Sx8-5 NBRC [CP089301]
3707359
3707448
+
Ser
TGA
-
¡û
>C231332096
CP093335
Alphaproteobacteria
Sphingopyxis granuli A2-E30 [CP093335]
2683651
2683740
+
Ser
TGA
-
¡û
>C231364344
CP095845
Alphaproteobacteria
Sphingopyxis sp. GC21 [CP095845]
1379943
1380032
+
Ser
TGA
-
¡û
>C231375885
CP096972
Alphaproteobacteria
Sphingomonas sp. SUN039 [CP096972]
998107
998018
-
Ser
TGA
-
¡û
>C231452801
CP102384
Alphaproteobacteria
Sphingopyxis sp. DBS4 [CP102384]
1702356
1702267
-
Ser
TGA
-
¡û
>C231486620
CP104207
Alphaproteobacteria
Sphingopyxis sp. PET50 [CP104207]
1294127
1294216
+
Ser
TGA
-
¡û
>C231595997
CP117417
Alphaproteobacteria
Novosphingobium humi KACC 19094 [CP117417]
1725663
1725752
+
Ser
TGA
-
¡û
>C231603183
CP117881
Alphaproteobacteria
Novosphingobium sp. KACC 22771 [CP117881]
2212996
2212907
-
Ser
TGA
-
¡û
>W2110778334
VUOG01000001
Alphaproteobacteria
Novosphingobium sp. NBM11 [VUOG]
4082757
4082846
+
Ser
TGA
[ENA]
¡û
>C241197782
CP103868
Alphaproteobacteria
Novosphingobium humi G5 [CP103868]
2264488
2264399
-
Ser
TGA
-
¡û
>C241328166
CP136575
Alphaproteobacteria
Sphingobium sp. [CP136575]
2084866
2084777
-
Ser
TGA
-
¡û
>C11116187
FR856862
Alphaproteobacteria
Novosphingobium sp. PP1Y [FR856862]
2724094
2724005
-
Ser
TGA
[Ensembl]
¡û
>W1510757023
JACU01000002
Alphaproteobacteria
Novosphingobium barchaimii LL02 [JACU]
333025
332936
-
Ser
TGA
[ENA]
¡û
>W1511221187
JNFC01000073
Alphaproteobacteria
Sphingopyxis sp. LC363 [JNFC]
32703
32614
-
Ser
TGA
[ENA]
¡û
>W1511221192
JNFD01000001
Alphaproteobacteria
Sphingopyxis sp. LC81 [JNFD]
323533
323622
+
Ser
TGA
[ENA]
¡û
>W1511357002
JRVC01000004
Alphaproteobacteria
Novosphingobium subterraneum DSM 12447 [JRVC]
267320
267231
-
Ser
TGA
[ENA]
¡û
>W1511398030
JTDI01000003
Alphaproteobacteria
Novosphingobium malaysiense MUSC 273 [JTDI]
525316
525227
-
Ser
TGA
[ENA]
¡û
>W1511519391
JXZE01000003
Alphaproteobacteria
Novosphingobium sp. P6W [JXZE]
772888
772977
+
Ser
TGA
[ENA]
¡û
>W11151075
AEWJ01000041
Alphaproteobacteria
Novosphingobium nitrogenifigens DSM 19370 [AEWJ]
229580
229491
-
Ser
TGA
[ENA]
¡û
>C161021382
CP009429
Alphaproteobacteria
Sphingopyxis macrogoltabida 203 [CP009429]
1779119
1779208
+
Ser
TGA
[Ensembl]
¡û
>C161040493
CP012199
Alphaproteobacteria
Sphingopyxis granuli TFA [CP012199]
2410161
2410250
+
Ser
TGA
[Ensembl]
¡û
>C161055613
CP013342
Alphaproteobacteria
Sphingopyxis terrae subsp. terrae NBRC 15098 203-1 [CP013342]
3268606
3268695
+
Ser
TGA
[Ensembl]
¡û
>W121009717
AGFM01000065
Alphaproteobacteria
Novosphingobium pentaromativorans US6-1 [AGFM]
89147
89236
+
Ser
TGA
[ENA]
¡û
>W121081067
AKFJ01000014
Alphaproteobacteria
Novosphingobium sp. Rr 2-17 [AKFJ]
106295
106384
+
Ser
TGA
[ENA]
¡û
>W121119220
ALVC01000060
Alphaproteobacteria
Sphingomonas sp. LH128 [ALVC]
22078
21989
-
Ser
TGA
[ENA]
¡û
>W1610071201
BCTW01000016
Alphaproteobacteria
Novosphingobium lentum NBRC 107847 [BCTW]
118317
118406
+
Ser
TGA
[ENA]
¡û
>W1610071365
BCUA01000015
Alphaproteobacteria
Sphingopyxis granuli NBRC 100800 [BCUA]
16495
16406
-
Ser
TGA
[ENA]
¡û
>W1610077031
BCZF01000006
Alphaproteobacteria
Novosphingobium subterraneum NBRC 16086 [BCZF]
8260
8349
+
Ser
TGA
[ENA]
¡û
>W1610077664
BCZQ01000004
Alphaproteobacteria
Sphingopyxis terrae NBRC 15098 [BCZQ]
221079
221168
+
Ser
TGA
[ENA]
¡û
>W1610614815
LGJH01000146
Alphaproteobacteria
Novosphingobium sp. ST904 [LGJH]
31520
31431
-
Ser
TGA
[ENA]
¡û
>W1610649358
LJHY01000022
Alphaproteobacteria
Novosphingobium sp. AAP83 [LJHY]
238664
238753
+
Ser
TGA
[ENA]
¡û
>W1610649404
LJHZ01000081
Alphaproteobacteria
Novosphingobium sp. AAP93 [LJHZ]
12330
12241
-
Ser
TGA
[ENA]
¡û
>W1610719286
LLZS01000007
Alphaproteobacteria
Novosphingobium fuchskuhlense [LLZS]
590086
590175
+
Ser
TGA
[ENA]
¡û
>W1610720555
LMAU01000002
Alphaproteobacteria
Tsuneonella troitsensis [LMAU]
166975
167064
+
Ser
TGA
[ENA]
¡û
>W1610727234
LMGF01000005
Alphaproteobacteria
Sphingopyxis sp. Root1497 [LMGF]
1494501
1494590
+
Ser
TGA
[ENA]
¡û
>W1610727370
LMGI01000003
Alphaproteobacteria
Sphingopyxis sp. Root154 [LMGI]
533100
533189
+
Ser
TGA
[ENA]
¡û
>W1610732098
LMJY01000022
Alphaproteobacteria
Novosphingobium sp. Leaf2 [LMJY]
100028
100117
+
Ser
TGA
[ENA]
¡û
>W1610754299
LNFI01000008
Alphaproteobacteria
Sphingomonadales bacterium Ga0077557 [LNFI]
31315
31226
-
Ser
TGA
[ENA]
¡û
>W1610770884
LNRR01000006
Alphaproteobacteria
Sphingopyxis sp. H005 [LNRR]
397200
397111
-
Ser
TGA
[ENA]
¡û
>W1610770930
LNRS01000005
Alphaproteobacteria
Sphingopyxis sp. H012 [LNRS]
396751
396662
-
Ser
TGA
[ENA]
¡û
>W1610770978
LNRT01000009
Alphaproteobacteria
Sphingopyxis sp. H038 [LNRT]
8499
8588
+
Ser
TGA
[ENA]
¡û
>W1610771020
LNRU01000006
Alphaproteobacteria
Sphingopyxis sp. H053 [LNRU]
427635
427546
-
Ser
TGA
[ENA]
¡û
>W1610771071
LNRV01000016
Alphaproteobacteria
Sphingopyxis sp. H077 [LNRV]
135204
135115
-
Ser
TGA
[ENA]
¡û
>W1610771126
LNRW01000051
Alphaproteobacteria
Sphingopyxis sp. H080 [LNRW]
8499
8588
+
Ser
TGA
[ENA]
¡û
>W1610771171
LNRX01000047
Alphaproteobacteria
Sphingopyxis sp. H085 [LNRX]
8499
8588
+
Ser
TGA
[ENA]
¡û
>W1610771227
LNRZ01000002
Alphaproteobacteria
Sphingopyxis sp. H050 [LNRZ]
393478
393567
+
Ser
TGA
[ENA]
¡û
>W1610771265
LNSA01000001
Alphaproteobacteria
Sphingopyxis sp. H115 [LNSA]
112566
112655
+
Ser
TGA
[ENA]
¡û
>W1610771728
LNSK01000002
Alphaproteobacteria
Sphingopyxis sp. A083 [LNSK]
459793
459882
+
Ser
TGA
[ENA]
¡û
>W1610912186
LSIA01000315
Alphaproteobacteria
Novosphingobium sp. CCH12-A3 [LSIA]
31132
31043
-
Ser
TGA
[ENA]
¡û
>W1610912578
LSIJ01000092
Alphaproteobacteria
Sphingomonas sp. CCH10-B3 [LSIJ]
44779
44690
-
Ser
TGA
[ENA]
¡û
>W1610938972
LURA01000079
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S22_B5 [LURA]
297
386
+
Ser
TGA
[ENA]
¡û
>W1610938989
LURB01000010
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S23_B6 [LURB]
53083
53172
+
Ser
TGA
[ENA]
¡û
>W1610939026
LURC01000056
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S24_B7 [LURC]
3123
3034
-
Ser
TGA
[ENA]
¡û
>W1610939081
LURE01000039
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S29_B3 [LURE]
12403
12492
+
Ser
TGA
[ENA]
¡û
>W1610939120
LURG01000316
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S38_B16 [LURG]
81
170
+
Ser
TGA
[ENA]
¡û
>W1610939134
LURH01000005
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S40_B6 [LURH]
6541
6452
-
Ser
TGA
[ENA]
¡û
>W1610939184
LURI01000004
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S42_B3 [LURI]
974068
973979
-
Ser
TGA
[ENA]
¡û
>W1710068566
BCTW01000016
Alphaproteobacteria
Novosphingobium lentum NBRC 107847 [BCTW]
118317
118406
+
Ser
TGA
[ENA]
¡û
>W1710068730
BCUA01000015
Alphaproteobacteria
Sphingopyxis granuli NBRC 100800 [BCUA]
16495
16406
-
Ser
TGA
[ENA]
¡û
>W1710074720
BCZF01000006
Alphaproteobacteria
Novosphingobium subterraneum NBRC 16086 [BCZF]
8260
8349
+
Ser
TGA
[ENA]
¡û
>W1710075302
BCZQ01000004
Alphaproteobacteria
Sphingopyxis terrae NBRC 15098 [BCZQ]
221079
221168
+
Ser
TGA
[ENA]
¡û
>W1710507998
FMVR01000006
Alphaproteobacteria
Novosphingobium aromaticivorans stygium [FMVR]
276351
276262
-
Ser
TGA
[ENA]
¡û
>W1710540055
FNWK01000002
Alphaproteobacteria
Sphingopyxis sp. YR583 [FNWK]
300759
300670
-
Ser
TGA
[ENA]
¡û
>W1710602888
FUYP01000009
Alphaproteobacteria
Sphingopyxis flava [FUYP]
2723
2634
-
Ser
TGA
[ENA]
¡û
>W1710605967
FWXL01000001
Alphaproteobacteria
Novosphingobium sp. B1 [FWXL]
327548
327459
-
Ser
TGA
[ENA]
¡û
>W1710609435
FXWL01000001
Alphaproteobacteria
Sphingopyxis terrae ummariensis [FXWL]
13358
13269
-
Ser
TGA
[ENA]
¡û
>W1710710275
LDRW01000024
Alphaproteobacteria
Novosphingobium barchaimii [LDRW]
3762
3673
-
Ser
TGA
[ENA]
¡û
>W1710736061
LGJH01000146
Alphaproteobacteria
Novosphingobium sp. ST904 [LGJH]
31520
31431
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
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(or Accession No.)
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(Sample source for ENV)
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Direction
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Decision
Download Sequence
Representative sequence of each cluster
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