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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.276976 (13 seq.)
>W131216232
ATVR01000009
Bacillota
Butyrivibrio sp. AE2015 [ATVR]
42057
42132
+
Pro
TGG
[ENA]
¡û
>W131216529
ATVX01000005
Bacillota
Butyrivibrio sp. VCB2006 [ATVX]
259307
259384
+
Pro
TGG
[ENA]
¡û
>C171068201
CP017831
Bacillota
Butyrivibrio hungatei MB2003 [CP017830, CP017831]
2522155
2522080
-
Pro
TGG
-
¡û
>WENV180653139
OCVV010161938
[OCVV] gut metagenome; gut
30
105
+
Pro
TGG
[ENA]
¡û
>WENV180653142
OCVV010161938
[OCVV] gut metagenome; gut
30
105
+
Pro
TGG
[ENA]
¡û
>W141559056
JHWL01000001
Bacillota
Butyrivibrio proteoclasticus P6B7 [JHWL]
352762
352837
+
Pro
TGG
[ENA]
¡û
>W141561226
JHYH01000002
Bacillota
Butyrivibrio proteoclasticus FD2007 [JHYH]
99928
99851
-
Pro
TGG
[ENA]
¡û
>C10102033
CP001810
Bacillota
Butyrivibrio proteoclasticus B316 [CP001810, CP001811]
3013810
3013733
-
Pro
TGG
[Ensembl]
¡û
>W1710509704
FMXK01000005
Bacillota
Butyrivibrio sp. INlla18 [FMXK]
217870
217795
-
Pro
TGG
[ENA]
¡û
>W1710538600
FNUR01000003
Bacillota
Butyrivibrio sp. Su6 [FNUR]
282174
282099
-
Pro
TGG
[ENA]
¡û
>W1710557077
FOKR01000003
Bacillota
Butyrivibrio sp. YAB3001 [FOKR]
264945
264871
-
Pro
TGG
[ENA]
¡û
>W1710573540
FOXO01000022
Bacillota
Butyrivibrio proteoclasticus [FOXO]
62588
62663
+
Pro
TGG
[ENA]
¡û
>W1710593239
FRDH01000003
Bacillota
Butyrivibrio hungatei DSM 14810 [FRDH]
603719
603644
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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