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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.277049 (41 seq.)
>C016847
AE017126
Cyanobacteriota
Prochlorococcus marinus subsp. marinus str. CCMP1375 CCMP1375; SS120 [AE017126]
334970
334895
-
Phe
GAA
[Ensembl]
¡û
>WENV180047147
MPLT02185669
[MPLT] marine metagenome; 70 m water sample filtered on 0.2 um supor filter
696
621
-
Phe
GAA
[ENA]
¡û
>W141038413
ALVU02000001
Cyanobacteriota
Synechocystis sp. PCC 7509 [ALVU]
3446785
3446713
-
Phe
GAA
[ENA]
¡û
>WENV183806488
PVBE011122509
[PVBE] marine metagenome; water
2166
2241
+
Phe
GAA
[ENA]
¡û
>WENV170389653
CEUA01032753
[CEUA] marine metagenome genome assembly TARA_132_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
537
462
-
Phe
GAA
[ENA]
¡û
>WENV170392327
CEUB01025894
[CEUB] marine metagenome genome assembly TARA_138_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
156
231
+
Phe
GAA
[ENA]
¡û
>WENV170608856
FUWD011131619
[FUWD] metagenome; unknown
235
310
+
Phe
GAA
[ENA]
¡û
>WENV170741941
LULT01017201
[LULT] marine metagenome; Red Sea water column Station 108 - depth 100m
410
485
+
Phe
GAA
[ENA]
¡û
>WENV170957180
MJUQ01023679
[MJUQ] soil metagenome; viral particles from soil sample PT1
241
169
-
Phe
GAA
[ENA]
¡û
>WENV170983839
MWVV01102203
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
138
66
-
Phe
GAA
[ENA]
¡û
>WENV170987980
MWVX01326180
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
129
201
+
Phe
GAA
[ENA]
¡û
>WENV170993934
MWWC01046316
[MWWC] soil metagenome; MS3-5 sample; Antarctic (ecotone) soil
138
66
-
Phe
GAA
[ENA]
¡û
>W1910695518
MDVL01001099
Cyanobacteriota
Halothece sp. KZN 001 [MDVL]
5590
5662
+
Phe
GAA
[ENA]
¡û
>W1911638415
PVWN01000039
Cyanobacteriota
Chlorogloea sp. CCALA 695 [PVWN]
8979
8907
-
Phe
GAA
[ENA]
¡û
>W1810519503
QCFE01000002
Cyanobacteriota
Prochlorococcus sp. AG-363-B11 [QCFE]
125276
125201
-
Phe
GAA
[ENA]
¡û
>W1810521359
QCHT01000004
Cyanobacteriota
Prochlorococcus sp. AG-402-G10 [QCHT]
43029
42954
-
Phe
GAA
[ENA]
¡û
>W1810521425
QCHV01000018
Cyanobacteriota
Prochlorococcus sp. AG-402-G22 [QCHV]
12626
12553
-
Phe
GAA
[ENA]
¡û
>W1810522713
QCJN01000002
Cyanobacteriota
Prochlorococcus sp. AG-409-B20 [QCJN]
10006
10078
+
Phe
GAA
[ENA]
¡û
>W1810522751
QCJP01000001
Cyanobacteriota
Prochlorococcus sp. AG-409-D06 [QCJP]
66446
66371
-
Phe
GAA
[ENA]
¡û
>W1810523197
QCKH01000002
Cyanobacteriota
Prochlorococcus sp. AG-409-L21 [QCKH]
131836
131911
+
Phe
GAA
[ENA]
¡û
>W1810523904
QCLI01000002
Cyanobacteriota
Prochlorococcus sp. AG-412-P08 [QCLI]
171911
171836
-
Phe
GAA
[ENA]
¡û
>W1810526266
QCPC01000004
Cyanobacteriota
Prochlorococcus sp. AG-436-C13 [QCPC]
40380
40455
+
Phe
GAA
[ENA]
¡û
>W1810526451
QCPK01000010
Cyanobacteriota
Prochlorococcus sp. AG-436-K22 [QCPK]
28714
28789
+
Phe
GAA
[ENA]
¡û
>W1810526531
QCPN01000004
Cyanobacteriota
Prochlorococcus sp. AG-436-O09 [QCPN]
7870
7795
-
Phe
GAA
[ENA]
¡û
>W1810526597
QCPQ01000002
Cyanobacteriota
Prochlorococcus sp. AG-436-O20 [QCPQ]
101292
101217
-
Phe
GAA
[ENA]
¡û
>W2010829111
MDVL01001099
Cyanobacteriota
Halothece sp. KZN 001 [MDVL]
5590
5662
+
Phe
GAA
[ENA]
¡û
>W2011230141
PVWN01000039
Cyanobacteriota
Chlorogloea sp. CCALA 695 [PVWN]
8979
8907
-
Phe
GAA
[ENA]
¡û
>C201110350
CP042326
Cyanobacteriota
Euhalothece natronophila Z-M001 [CP042326]
139694
139622
-
Phe
GAA
-
¡û
>C231562322
CP114779
Cyanobacteriota
Prochlorococcus marinus str. MIT 0919 [CP114779]
1508060
1507988
-
Phe
GAA
-
¡û
>C231562361
CP114780
Cyanobacteriota
Prochlorococcus marinus str. MIT 0918 [CP114780]
1587064
1586989
-
Phe
GAA
-
¡û
>C241348691
CP139302
Cyanobacteriota
Prochlorococcus sp. MIT 1300 [CP139302]
802209
802283
+
Phe
GAA
-
¡û
>W1511219060
JNAT01000010
Cyanobacteriota
Prochlorococcus marinus str. LG [JNAT]
247913
247988
+
Phe
GAA
[ENA]
¡û
>W1511219092
JNAU01000004
Cyanobacteriota
Prochlorococcus sp. MIT 0601 [JNAU]
241833
241905
+
Phe
GAA
[ENA]
¡û
>W1511219129
JNAV01000002
Cyanobacteriota
Prochlorococcus sp. MIT 0602 [JNAV]
203655
203730
+
Phe
GAA
[ENA]
¡û
>W1511219158
JNAW01000001
Cyanobacteriota
Prochlorococcus sp. MIT 0603 [JNAW]
308051
307976
-
Phe
GAA
[ENA]
¡û
>W1511219268
JNAY01000018
Cyanobacteriota
Prochlorococcus marinus str. SS2 [JNAY]
233086
233011
-
Phe
GAA
[ENA]
¡û
>W1511219306
JNAZ01000008
Cyanobacteriota
Prochlorococcus marinus str. SS35 [JNAZ]
318184
318109
-
Phe
GAA
[ENA]
¡û
>W1511219439
JNBD01000002
Cyanobacteriota
Prochlorococcus marinus str. SS51 [JNBD]
64882
64807
-
Phe
GAA
[ENA]
¡û
>W1511219477
JNBE01000002
Cyanobacteriota
Prochlorococcus sp. SS52 [JNBE]
80175
80100
-
Phe
GAA
[ENA]
¡û
>C131010391
CP003944
Cyanobacteriota
Dactylococcopsis salina PCC 8305 [CP003944]
712376
712304
-
Phe
GAA
[Ensembl]
¡û
>C131010430
CP003945
Cyanobacteriota
Halothece sp. PCC 7418 [CP003945]
1566622
1566548
-
Phe
GAA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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