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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.27707 (31 seq.)
>W1910596186
LAGX01000021
Cyanobacteriota
Nostoc linckia z1 [LAGX]
53936
54023
+
Ser
GGA
[ENA]
¡û
>W1910596268
LAGY01000031
Cyanobacteriota
Nostoc linckia z2 [LAGY]
56515
56602
+
Ser
GGA
[ENA]
¡û
>W1910596367
LAGZ01000019
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
56572
56659
+
Ser
GGA
[ENA]
¡û
>W1910596452
LAHA01000019
Cyanobacteriota
Nostoc linckia z4 [LAHA]
53919
54006
+
Ser
GGA
[ENA]
¡û
>W1910596513
LAHB01000023
Cyanobacteriota
Nostoc linckia z6 [LAHB]
53909
53996
+
Ser
GGA
[ENA]
¡û
>W1910596641
LAHC01000060
Cyanobacteriota
Nostoc linckia z7 [LAHC]
53941
54028
+
Ser
GGA
[ENA]
¡û
>W1910596663
LAHD01000008
Cyanobacteriota
Nostoc linckia z8 [LAHD]
50997
50910
-
Ser
GGA
[ENA]
¡û
>W1910596766
LAHE01000038
Cyanobacteriota
Nostoc linckia z9 [LAHE]
15930
15843
-
Ser
GGA
[ENA]
¡û
>W1910596889
LAHF01000063
Cyanobacteriota
Nostoc linckia z13 [LAHF]
30474
30387
-
Ser
GGA
[ENA]
¡û
>W1910596980
LAHG01000073
Cyanobacteriota
Nostoc linckia z14 [LAHG]
30482
30395
-
Ser
GGA
[ENA]
¡û
>W1910597056
LAHH01000080
Cyanobacteriota
Nostoc linckia z15 [LAHH]
4761
4848
+
Ser
GGA
[ENA]
¡û
>W1910597151
LAHI01000084
Cyanobacteriota
Nostoc linckia z16 [LAHI]
4757
4844
+
Ser
GGA
[ENA]
¡û
>W1910597180
LAHJ01000012
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
51169
51082
-
Ser
GGA
[ENA]
¡û
>W2010745613
JACKZU010000241
Cyanobacteriota
Nostoc sp. 2RC [JACKZU]
4553
4640
+
Ser
GGA
[ENA]
¡û
>W2010766529
LAGX01000021
Cyanobacteriota
Nostoc linckia z1 [LAGX]
53936
54023
+
Ser
GGA
[ENA]
¡û
>W2010766611
LAGY01000031
Cyanobacteriota
Nostoc linckia z2 [LAGY]
56515
56602
+
Ser
GGA
[ENA]
¡û
>W2010766710
LAGZ01000019
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
56572
56659
+
Ser
GGA
[ENA]
¡û
>W2010766795
LAHA01000019
Cyanobacteriota
Nostoc linckia z4 [LAHA]
53919
54006
+
Ser
GGA
[ENA]
¡û
>W2010766856
LAHB01000023
Cyanobacteriota
Nostoc linckia z6 [LAHB]
53909
53996
+
Ser
GGA
[ENA]
¡û
>W2010766984
LAHC01000060
Cyanobacteriota
Nostoc linckia z7 [LAHC]
53941
54028
+
Ser
GGA
[ENA]
¡û
>W2010767006
LAHD01000008
Cyanobacteriota
Nostoc linckia z8 [LAHD]
50997
50910
-
Ser
GGA
[ENA]
¡û
>W2010767109
LAHE01000038
Cyanobacteriota
Nostoc linckia z9 [LAHE]
15930
15843
-
Ser
GGA
[ENA]
¡û
>W2010767232
LAHF01000063
Cyanobacteriota
Nostoc linckia z13 [LAHF]
30474
30387
-
Ser
GGA
[ENA]
¡û
>W2010767323
LAHG01000073
Cyanobacteriota
Nostoc linckia z14 [LAHG]
30482
30395
-
Ser
GGA
[ENA]
¡û
>W2010767399
LAHH01000080
Cyanobacteriota
Nostoc linckia z15 [LAHH]
4761
4848
+
Ser
GGA
[ENA]
¡û
>W2010767494
LAHI01000084
Cyanobacteriota
Nostoc linckia z16 [LAHI]
4757
4844
+
Ser
GGA
[ENA]
¡û
>W2010767523
LAHJ01000012
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
51169
51082
-
Ser
GGA
[ENA]
¡û
>W2110232037
JACJSG010000012
Cyanobacteriota
Anabaena azotica FACHB-119 [JACJSG]
161427
161339
-
Ser
GGA
[ENA]
¡û
>W2110233445
JACJTK010000045
Cyanobacteriota
Nostoc sp. FACHB-857 [JACJTK]
20521
20434
-
Ser
GGA
[ENA]
¡û
>W2110233844
JACJTU010000045
Cyanobacteriota
Nostoc paludosum FACHB-159 [JACJTU]
31762
31849
+
Ser
GGA
[ENA]
¡û
>W2110405651
JAECZA010000004
Cyanobacteriota
Dendronalium phyllosphericum CENA369 [JAECZA]
25923
25835
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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