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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.277190 (11 seq.)
>WENV180288132
OBIL01058816
[OBIL] metagenome; hydrothermal vent
116
191
+
Val
TAC
[ENA]
¡û
>WENV180299676
OBJC01083623
[OBJC] metagenome; water
248
173
-
Val
TAC
[ENA]
¡û
>WENV180581898
OCML01020600
[OCML] metagenome; diffuse fluid
284
209
-
Val
TAC
[ENA]
¡û
>WENV181213107
OFBU01010176
[OFBU] metagenome; hydrothermal vent
727
802
+
Val
TAC
[ENA]
¡û
>WENV183718918
PDWJ01007683
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
7788
7713
-
Val
TAC
[ENA]
¡û
>C191006426
AP019005
Campylobacterota
Hydrogenimonas sp. [AP019005]
1506782
1506857
+
Val
TAC
-
¡û
>C211007157
AP022847
Campylobacterota
Nitrosophilus alvini EPR55-1 [AP022847]
1305497
1305572
+
Val
TAC
-
¡û
>C211008609
AP023212
Campylobacterota
Hydrogenimonas urashimensis SSM-sur55 [AP023212]
2208955
2208880
-
Val
TAC
-
¡û
>C241011744
AP027370
Campylobacterota
Hydrogenimonas cancrithermarum ISO32 [AP027370]
2108822
2108747
-
Val
TAC
-
¡û
>C11116239
CP002452
Campylobacterota
Nitratifractor salsuginis DSM 16511 [CP002452]
631381
631306
-
Val
TAC
[Ensembl]
¡û
>W1710572924
FOXB01000001
Campylobacterota
Hydrogenimonas thermophila [FOXB]
75779
75704
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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