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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.277211 (83 seq.)
>W1710866818
LMHU01000001
Actinomycetota
Terrabacter sp. Root181 [LMHU]
932329
932256
-
Glu
TTC
[ENA]
¡û
>W1710868144
LMIW01000001
Actinomycetota
Terrabacter sp. Root85 [LMIW]
478489
478562
+
Glu
TTC
[ENA]
¡û
>W1711312315
MAST01000023
Actinomycetota
Humibacillus sp. DSM 29435 [MAST]
143257
143330
+
Glu
TTC
[ENA]
¡û
>W1711334214
MBQD01000026
Actinomycetota
Tessaracoccus lapidicaptus [MBQD]
78764
78837
+
Glu
TTC
[ENA]
¡û
>W131224323
AUCS01000002
Actinomycetota
Dermatophilus congolensis DSM 44180 = NBRC 105199 [AUCS]
684274
684347
+
Glu
TTC
[ENA]
¡û
>W131185522
ARTT01000010
Actinomycetota
Terracoccus sp. 273MFTsu3.1 [ARTT]
1105458
1105385
-
Glu
TTC
[ENA]
¡û
>W1711517435
MLJO01000022
Actinomycetota
Intrasporangium flavum flava [MLJO]
4042
4115
+
Glu
TTC
[ENA]
¡û
>C171091499
CP019229
Actinomycetota
Tessaracoccus sp. T2.5-30 [CP019229]
2520670
2520597
-
Glu
TTC
-
¡û
>C171096274
CP019606
Actinomycetota
Tessaracoccus aquimaris NSG39 [CP019606]
237938
237865
-
Glu
TTC
-
¡û
>C171096281
CP019607
Actinomycetota
Tessaracoccus flavescens SST-39T [CP019607]
795802
795877
+
Glu
TTC
-
¡û
>WENV180285276
OBID01312283
[OBID] metagenome; sludge
154
227
+
Glu
TTC
[ENA]
¢þ
>WENV180728180
ODGU01029213
[ODGU] human metagenome; G_DNA_Supragingival plaque
1306
1231
-
Glu
TTC
[ENA]
¢þ
>WENV180735748
ODHB01000531
[ODHB] human metagenome; G_DNA_Supragingival plaque
14020
14095
+
Glu
TTC
[ENA]
¢þ
>WENV180749807
ODHS01000031
[ODHS] human metagenome; G_DNA_Supragingival plaque
91268
91193
-
Glu
TTC
[ENA]
¢þ
>WENV180777581
ODIL01021134
[ODIL] human metagenome; G_DNA_Supragingival plaque
372
297
-
Glu
TTC
[ENA]
¢þ
>WENV180788673
ODIS01094037
[ODIS] human metagenome; G_DNA_Supragingival plaque
298
373
+
Glu
TTC
[ENA]
¢þ
>WENV180804693
ODJG01009444
[ODJG] human metagenome; G_DNA_Supragingival plaque
1208
1133
-
Glu
TTC
[ENA]
¢þ
>WENV180823227
ODJW01009847
[ODJW] human metagenome; G_DNA_Supragingival plaque
684
759
+
Glu
TTC
[ENA]
¢þ
>WENV180833082
ODKC01013018
[ODKC] human metagenome; G_DNA_Supragingival plaque
378
303
-
Glu
TTC
[ENA]
¢þ
>WENV180834500
ODKD01040343
[ODKD] human metagenome; G_DNA_Supragingival plaque
500
425
-
Glu
TTC
[ENA]
¢þ
>WENV180843927
ODKN01018999
[ODKN] human metagenome; G_DNA_Supragingival plaque
509
584
+
Glu
TTC
[ENA]
¢þ
>WENV180847511
ODKT01095961
[ODKT] human metagenome; G_DNA_Supragingival plaque
311
236
-
Glu
TTC
[ENA]
¢þ
>WENV180860082
ODLD01017114
[ODLD] human metagenome; G_DNA_Supragingival plaque
1254
1179
-
Glu
TTC
[ENA]
¢þ
>WENV180889454
ODMN01045127
[ODMN] human metagenome; G_DNA_Supragingival plaque
720
645
-
Glu
TTC
[ENA]
¢þ
>WENV180922985
ODTJ01026413
[ODTJ] human metagenome; G_DNA_Supragingival plaque
549
474
-
Glu
TTC
[ENA]
¢þ
>WENV180924562
ODTK01007714
[ODTK] human metagenome; G_DNA_Supragingival plaque
3163
3238
+
Glu
TTC
[ENA]
¢þ
>WENV180927730
ODTM01002981
[ODTM] human metagenome; G_DNA_Supragingival plaque
4654
4579
-
Glu
TTC
[ENA]
¢þ
>WENV180933292
ODTR01000012
[ODTR] human metagenome; G_DNA_Supragingival plaque
117145
117070
-
Glu
TTC
[ENA]
¢þ
>WENV180934394
ODTS01000011
[ODTS] human metagenome; G_DNA_Subgingival plaque
24451
24376
-
Glu
TTC
[ENA]
¢þ
>WENV180944545
ODUC01022529
[ODUC] human metagenome; G_DNA_Supragingival plaque
22
97
+
Glu
TTC
[ENA]
¢þ
>WENV180963913
ODUO01000027
[ODUO] human metagenome; G_DNA_Supragingival plaque
37987
37912
-
Glu
TTC
[ENA]
¢þ
>WENV180973396
ODUW01004801
[ODUW] human metagenome; G_DNA_Supragingival plaque
2897
2822
-
Glu
TTC
[ENA]
¢þ
>WENV180973614
ODUW01009700
[ODUW] human metagenome; G_DNA_Supragingival plaque
2539
2464
-
Glu
TTC
[ENA]
¢þ
>WENV180980675
ODVE01001058
[ODVE] human metagenome; G_DNA_Supragingival plaque
7117
7042
-
Glu
TTC
[ENA]
¢þ
>WENV180982666
ODVF01000262
[ODVF] human metagenome; G_DNA_Supragingival plaque
18791
18866
+
Glu
TTC
[ENA]
¢þ
>WENV181002284
ODVX01000176
[ODVX] human metagenome; G_DNA_Supragingival plaque
4932
5007
+
Glu
TTC
[ENA]
¢þ
>WENV181008365
ODWE01004344
[ODWE] human metagenome; G_DNA_Supragingival plaque
6056
6131
+
Glu
TTC
[ENA]
¢þ
>WENV181050149
ODYD01007499
[ODYD] human metagenome; G_DNA_Supragingival plaque
2773
2848
+
Glu
TTC
[ENA]
¢þ
>WENV181063695
ODYP01002616
[ODYP] human metagenome; G_DNA_Supragingival plaque
6086
6161
+
Glu
TTC
[ENA]
¢þ
>WENV181070580
OEAE01003588
[OEAE] human metagenome; G_DNA_Supragingival plaque
1050
1125
+
Glu
TTC
[ENA]
¢þ
>WENV181077512
OEAP01065222
[OEAP] human metagenome; G_DNA_Supragingival plaque
477
552
+
Glu
TTC
[ENA]
¢þ
>WENV181077692
OEAP01109129
[OEAP] human metagenome; G_DNA_Supragingival plaque
179
254
+
Glu
TTC
[ENA]
¢þ
>WENV181079362
OEAS01005428
[OEAS] human metagenome; G_DNA_Supragingival plaque
5172
5247
+
Glu
TTC
[ENA]
¢þ
>WENV181083054
OEAV01002151
[OEAV] human metagenome; G_DNA_Supragingival plaque
2094
2169
+
Glu
TTC
[ENA]
¢þ
>WENV181122232
OEFL01159718
[OEFL] human metagenome; G_DNA_Supragingival plaque
212
137
-
Glu
TTC
[ENA]
¢þ
>WENV181138106
OEGJ01110347
[OEGJ] human metagenome; G_DNA_Supragingival plaque
291
216
-
Glu
TTC
[ENA]
¢þ
>WENV181156312
OEIE01009316
[OEIE] human metagenome; G_DNA_Supragingival plaque
857
932
+
Glu
TTC
[ENA]
¢þ
>WENV181177299
OEJS01000547
[OEJS] human metagenome; G_DNA_Supragingival plaque
6269
6344
+
Glu
TTC
[ENA]
¢þ
>WENV181181842
OEJV01000402
[OEJV] human metagenome; G_DNA_Supragingival plaque
4837
4912
+
Glu
TTC
[ENA]
¢þ
>WENV181375847
OFQZ01004729
[OFQZ] wastewater metagenome; Exp Tend NO 0WW
2441
2366
-
Glu
TTC
[ENA]
¢þ
>W141143058
AWSA01000009
Actinomycetota
Intrasporangium oryzae NRRL B-24470 [AWSA]
85440
85513
+
Glu
TTC
[ENA]
¡û
>W141242942
CAJA01000042
Actinomycetota
Tetrasphaera australiensis Ben110 [CAJA]
6293
6220
-
Glu
TTC
[ENA]
¡û
>W141243057
CAJC01000172
Actinomycetota
Tetrasphaera jenkinsii Ben 74 [CAJC]
16080
16153
+
Glu
TTC
[ENA]
¡û
>WENV183508637
OMHE01007698
[OMHE] human oral metagenome; human oral
737
662
-
Glu
TTC
[ENA]
¢þ
>WENV183704045
PDWI01000011
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
203392
203465
+
Glu
TTC
[ENA]
¢þ
>WENV183706014
PDWI01002921
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
6047
5972
-
Glu
TTC
[ENA]
¢þ
>WENV183711335
PDWI01066889
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
24
99
+
Glu
TTC
[ENA]
¢þ
>WENV183711459
PDWI01070288
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2658
2731
+
Glu
TTC
[ENA]
¢þ
>WENV183715513
PDWI01244871
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
23
96
+
Glu
TTC
[ENA]
¢þ
>WENV183718847
PDWJ01006964
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
15892
15817
-
Glu
TTC
[ENA]
¢þ
>WENV183720848
PDWJ01047275
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
863
938
+
Glu
TTC
[ENA]
¢þ
>WENV183722456
PDWJ01130572
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1007
1082
+
Glu
TTC
[ENA]
¢þ
>WENV183748561
PPFU01053033
[PPFU] hypolithon metagenome; Antarctic Hypolithon
1732
1805
+
Glu
TTC
[ENA]
¢þ
>WENV170887687
MDTC01243955
[MDTC] marine metagenome; seawater
3892
3819
-
Glu
TTC
[ENA]
¢þ
>C181196289
CP031145
Actinomycetota
Intrasporangium calvum C5 [CP031145]
3151333
3151406
+
Glu
TTC
-
¡û
>C181225149
LT906453
Actinomycetota
Dermatophilus congolensis NCTC13039 [LT906453]
2531555
2531628
+
Glu
TTC
-
¡û
>C181232150
LT996886
Actinomycetota
Tessaracoccus timonensis Marseille-P59951 [LT996886]
392627
392700
+
Glu
TTC
-
¡û
>C191173844
CP040007
Actinomycetota
Arachnia propionica F0700 [CP040007]
2733250
2733175
-
Glu
TTC
-
¡û
>C191210859
LR134406
Actinomycetota
Arachnia propionica NCTC12967 [LR134406]
2716917
2716842
-
Glu
TTC
-
¡û
>C191214574
LR134535
Actinomycetota
Arachnia propionica NCTC11666 [LR134535]
2707665
2707590
-
Glu
TTC
-
¡û
>W141557441
JHVD01000011
Actinomycetota
Propionibacteriaceae bacterium P6A17 [JHVD]
73670
73743
+
Glu
TTC
[ENA]
¡û
>W141773540
JOIN01000005
Actinomycetota
Corynebacterium variabile [JOIN]
346743
346670
-
Glu
TTC
[ENA]
¡û
>W1510061615
CCYM01000002
Actinomycetota
Nigerium massiliense SIT7 [CCYM]
112290
112365
+
Glu
TTC
[ENA]
¡û
>C11111425
CP002343
Actinomycetota
Intrasporangium calvum DSM 43043 [CP002343]
3375734
3375807
+
Glu
TTC
[Ensembl]
¡û
>W1511534738
JYOE01000014
Actinomycetota
Terrabacter sp. 28 [JYOE]
215490
215563
+
Glu
TTC
[ENA]
¡û
>C121002951
CP002734
Actinomycetota
Arachnia propionica F0230a [CP002734]
2745589
2745514
-
Glu
TTC
[Ensembl]
¡û
>W1610074496
BCWS01000005
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
219564
219489
-
Glu
TTC
[ENA]
¡û
>W1610729164
LMHU01000001
Actinomycetota
Terrabacter sp. Root181 [LMHU]
932329
932256
-
Glu
TTC
[ENA]
¡û
>W1610730490
LMIW01000001
Actinomycetota
Terrabacter sp. Root85 [LMIW]
478489
478562
+
Glu
TTC
[ENA]
¡û
>W1611066181
MBQD01000026
Actinomycetota
Tessaracoccus lapidicaptus [MBQD]
78764
78837
+
Glu
TTC
[ENA]
¡û
>W1710071614
BCWS01000005
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
219564
219489
-
Glu
TTC
[ENA]
¡û
>W1710521716
FNGP01000003
Actinomycetota
Tessaracoccus oleiagri [FNGP]
88320
88245
-
Glu
TTC
[ENA]
¡û
>W1710588344
FQZG01000055
Actinomycetota
Tessaracoccus bendigoensis DSM 12906 [FQZG]
3994
3921
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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