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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.277241 (29 seq.)
>WENV180275568
OBHT01068331
[OBHT] metagenome; hydrothermal vent
156
81
-
Phe
GAA
[ENA]
¡û
>WENV180288414
OBIL01161977
[OBIL] metagenome; hydrothermal vent
106
181
+
Phe
GAA
[ENA]
¡û
>WENV180581737
OCMK01059423
[OCMK] metagenome; diffuse fluid
99
24
-
Phe
GAA
[ENA]
¡û
>WENV180648344
OCSI01177664
[OCSI] metagenome; diffuse fluid
79
4
-
Phe
GAA
[ENA]
¡û
>W141083600
AUPZ01000004
Campylobacterota
Sulfurimonas hongkongensis AST-10 [AUPZ]
160824
160749
-
Phe
GAA
[ENA]
¡û
>WENV181210161
OFBG01007552
[OFBG] metagenome; hydrothermal vent
94
169
+
Phe
GAA
[ENA]
¡û
>WENV181211541
OFBK01018033
[OFBK] metagenome; hydrothermal vent
421
346
-
Phe
GAA
[ENA]
¡û
>WENV181224797
OFDG01005136
[OFDG] metagenome; hydrothermal vent
441
366
-
Phe
GAA
[ENA]
¡û
>WENV181226508
OFDL01004816
[OFDL] metagenome; hydrothermal vent
459
534
+
Phe
GAA
[ENA]
¡û
>WENV170575503
FPHB01000042
[FPHB] hydrothermal vent metagenome genome assembly, contig: NODE_29.; water
48140
48215
+
Phe
GAA
[ENA]
¡û
>WENV170575650
FPHH01000076
[FPHH] hydrothermal vent metagenome genome assembly, contig: NODE_101.; water
5163
5238
+
Phe
GAA
[ENA]
¡û
>WENV170575651
FPHH01000076
[FPHH] hydrothermal vent metagenome genome assembly, contig: NODE_101.; water
5258
5333
+
Phe
GAA
[ENA]
¡û
>WENV170575718
FPHK01000020
[FPHK] hydrothermal vent metagenome genome assembly, contig: NODE_31.; water
1042
967
-
Phe
GAA
[ENA]
¡û
>WENV170575724
FPHK01000100
[FPHK] hydrothermal vent metagenome genome assembly, contig: NODE_31.; water
5751
5676
-
Phe
GAA
[ENA]
¡û
>WENV170575792
FPHP01000001
[FPHP] hydrothermal vent metagenome genome assembly, contig: NODE_32.; water
68275
68350
+
Phe
GAA
[ENA]
¡û
>C211052442
CP041165
Campylobacterota
Sulfurimonas sp. B2 [CP041165]
1704783
1704858
+
Phe
GAA
-
¡û
>C211052469
CP041235
Campylobacterota
Sulfurimonas sp. S2-6 [CP041235]
798552
798627
+
Phe
GAA
-
¡û
>C211052482
CP041235
Campylobacterota
Sulfurimonas sp. S2-6 [CP041235]
1907295
1907220
-
Phe
GAA
-
¡û
>C211052662
CP041406
Campylobacterota
Sulfurimonas paralvinellae GO25 [CP041406]
1685627
1685552
-
Phe
GAA
-
¡û
>C211052673
CP041406
Campylobacterota
Sulfurimonas paralvinellae GO25 [CP041406]
375660
375585
-
Phe
GAA
-
¡û
>C231194013
CP084578
Campylobacterota
Sulfurimonas sp. SWIR-19 [CP084578]
798799
798874
+
Phe
GAA
-
¡û
>C231194026
CP084578
Campylobacterota
Sulfurimonas sp. SWIR-19 [CP084578]
1943135
1943060
-
Phe
GAA
-
¡û
>C231248258
CP087998
Campylobacterota
Sulfurimonas sp. HSL-3221 [CP087998]
456418
456343
-
Phe
GAA
-
¡û
>C241042970
CP035534
Campylobacterota
Sulfurimonas hydrogeniphila NW10 [CP035534]
381859
381934
+
Phe
GAA
-
¡û
>C241043000
CP035534
Campylobacterota
Sulfurimonas hydrogeniphila NW10 [CP035534]
1539368
1539293
-
Phe
GAA
-
¡û
>C241081507
CP043617
Campylobacterota
Sulfurimonas lithotrophica GYSZ_1 [CP043617]
1748271
1748346
+
Phe
GAA
-
¡û
>C241081508
CP043617
Campylobacterota
Sulfurimonas lithotrophica GYSZ_1 [CP043617]
1748369
1748444
+
Phe
GAA
-
¡û
>C11119353
CP002205
Campylobacterota
Sulfurimonas autotrophica DSM 16294 [CP002205]
542540
542465
-
Phe
GAA
[Ensembl]
¡û
>C11119354
CP002205
Campylobacterota
Sulfurimonas autotrophica DSM 16294 [CP002205]
542443
542368
-
Phe
GAA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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