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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.277264 (13 seq.)
>C025291
CT971583
Cyanobacteriota
Synechococcus sp. WH 7803 [CT971583]
369623
369551
-
Ala
CGC
[Ensembl]
¡û
>w014496
AAOK01000002
Cyanobacteriota
Synechococcus sp. WH 7805 [AAOK]
186563
186638
+
Ala
CGC
[ENA]
¡û
>WENV180101313
OAOU01023873
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
270
342
+
Ala
CGC
[ENA]
¡û
>WENV180585765
OCOL01104297
[OCOL] marine metagenome; ENVO:00002010
71
143
+
Ala
CGC
[ENA]
¡û
>WENV180635568
OCRD01071284
[OCRD] marine metagenome; seawater
149
221
+
Ala
CGC
[ENA]
¡û
>WENV170173841
CEOQ01248895
[CEOQ] marine metagenome genome assembly TARA_034_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
268
342
+
Ala
CGC
[ENA]
¡û
>WENV170347593
CETG01148750
[CETG] marine metagenome genome assembly TARA_122_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
316
244
-
Ala
CGC
[ENA]
¡û
>WENV170915087
MDTE01158117
[MDTE] marine metagenome; seawater
1780
1854
+
Ala
CGC
[ENA]
¡û
>C211072560
CP047939
Cyanobacteriota
Synechococcus sp. BMK-MC-1 [CP047939]
417847
417775
-
Ala
CGC
-
¡û
>C211072828
CP047945
Cyanobacteriota
Synechococcus sp. PROS-7-1 [CP047945]
428424
428352
-
Ala
CGC
-
¡û
>C211073094
CP047952
Cyanobacteriota
Synechococcus sp. MEDNS5 [CP047952]
381499
381427
-
Ala
CGC
-
¡û
>C131004432
CP003592
Cyanobacteriota
Pseudanabaena sp. PCC 7367 [CP003592]
3512536
3512612
+
Ala
CGC
[Ensembl]
¡û
>W1710005662
ALVQ01000011
Cyanobacteriota
Spirulina major PCC 6313 [ALVQ]
840323
840251
-
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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