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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.277270 (13 seq.)
>W141170945
AXZC01000004
Gammaproteobacteria
Thiomicrorhabdus chilensis DSM 12352 [AXZC]
708209
708134
-
Lys
TTT
[ENA]
¡û
>W141170946
AXZC01000004
Gammaproteobacteria
Thiomicrorhabdus chilensis DSM 12352 [AXZC]
708026
707951
-
Lys
TTT
[ENA]
¡û
>WENV183719487
PDWJ01015018
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
936
861
-
Lys
TTT
[ENA]
¢þ
>C191004378
AP018722
Gammaproteobacteria
Thiomicrorhabdus aquaedulcis HaS4 [AP018722]
1202264
1202339
+
Lys
TTT
-
¡û
>C191004379
AP018722
Gammaproteobacteria
Thiomicrorhabdus aquaedulcis HaS4 [AP018722]
1202374
1202449
+
Lys
TTT
-
¡û
>C191098467
CP033040
Gammaproteobacteria
Thiomicrorhabdus indica 13-15A [CP033040]
1668336
1668261
-
Lys
TTT
-
¡û
>C191098468
CP033040
Gammaproteobacteria
Thiomicrorhabdus indica 13-15A [CP033040]
1668185
1668110
-
Lys
TTT
-
¡û
>C191180171
CP040602
Gammaproteobacteria
Thiomicrorhabdus sediminis G1 [CP040602]
1532188
1532113
-
Lys
TTT
-
¡û
>C191180172
CP040602
Gammaproteobacteria
Thiomicrorhabdus sediminis G1 [CP040602]
1532077
1532002
-
Lys
TTT
-
¡û
>W141733796
JNLD01000003
Gammaproteobacteria
Thiomicrorhabdus sp. Milos-T2 Milos-T2 [JNLD]
1000373
1000298
-
Lys
TTT
[ENA]
¡û
>W141733797
JNLD01000003
Gammaproteobacteria
Thiomicrorhabdus sp. Milos-T2 Milos-T2 [JNLD]
1000243
1000168
-
Lys
TTT
[ENA]
¡û
>W141733798
JNLD01000003
Gammaproteobacteria
Thiomicrorhabdus sp. Milos-T2 Milos-T2 [JNLD]
1000113
1000038
-
Lys
TTT
[ENA]
¡û
>W1710575171
FOYY01000003
Gammaproteobacteria
Thiomicrospira sp. ALE5 ALE5 [FOYY]
444078
444003
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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