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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.277276 (36 seq.)
>W131244879
CAQP01000071
Gammaproteobacteria
Lysobacter antibioticus HS124 [CAQP]
27661
27586
-
Glu
CTC
[ENA]
¡û
>WENV180096941
MTBK01156633
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
290
365
+
Glu
CTC
[ENA]
¢þ
>WENV180285207
OBID01276503
[OBID] metagenome; sludge
228
303
+
Glu
CTC
[ENA]
¢þ
>WENV181144654
OEHO01055781
[OEHO] metagenome; unknown
261
186
-
Glu
CTC
[ENA]
¢þ
>WENV181172348
OEIV010614727
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
142
217
+
Glu
CTC
[ENA]
¢þ
>WENV181294589
OFHH01012512
[OFHH] soil metagenome; Clay
936
1011
+
Glu
CTC
[ENA]
¢þ
>WENV181385508
OFRI01105587
[OFRI] wastewater metagenome; Exp Tend VB 90WW
165
90
-
Glu
CTC
[ENA]
¢þ
>WENV182953995
OKVZ01005118
[OKVZ] human gut metagenome; human gut
462
537
+
Glu
CTC
[ENA]
¢þ
>WENV183728883
PJTQ01000965
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
2659
2734
+
Glu
CTC
[ENA]
¢þ
>WENV183748447
PPFU01040629
[PPFU] hypolithon metagenome; Antarctic Hypolithon
2405
2480
+
Glu
CTC
[ENA]
¢þ
>WENV170002433
AGTN01028484
[AGTN] bioreactor metagenome; poplar biomass
644
719
+
Glu
CTC
[ENA]
¢þ
>WENV170018705
BBPD01000437
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
448
373
-
Glu
CTC
[ENA]
¢þ
>WENV170019733
BBPE01000352
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
19140
19215
+
Glu
CTC
[ENA]
¢þ
>WENV170577062
FRDC01002922
[FRDC] freshwater metagenome; water
64
139
+
Glu
CTC
[ENA]
¢þ
>WENV170724839
LSQX01320727
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
15202
15277
+
Glu
CTC
[ENA]
¢þ
>C181001037
AP014940
Gammaproteobacteria
Lysobacter enzymogenes M497-1 [AP014940]
2212715
2212640
-
Glu
CTC
-
¡û
>C181185988
CP029843
Gammaproteobacteria
Lysobacter maris HZ9B [CP029843]
2515022
2515097
+
Glu
CTC
-
¡û
>C191139374
CP035376
Gammaproteobacteria
Luteimonas sp. YGD11-2 [CP035376]
2098592
2098667
+
Glu
CTC
-
¡û
>C191181048
CP040656
Gammaproteobacteria
Lysobacter enzymogenes YC36 [CP040656]
3747437
3747512
+
Glu
CTC
-
¡û
>C191189100
CP041242
Gammaproteobacteria
Lysobacter alkalisoli SJ-36 [CP041242]
1474630
1474555
-
Glu
CTC
-
¡û
>W1911218325
NRQR01000001
Gammaproteobacteria
Luteimonas sp. 4-12 [NRQR]
39753
39828
+
Glu
CTC
[ENA]
¡û
>W1911283693
NTJF01000010
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0831 [NTJF]
28056
28131
+
Glu
CTC
[ENA]
¡û
>W1911283740
NTJG01000009
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0793 [NTJG]
118511
118436
-
Glu
CTC
[ENA]
¡û
>W1911283813
NTJI01000001
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0399 [NTJI]
583201
583276
+
Glu
CTC
[ENA]
¡û
>W1911405221
NWQL01000001
Gammaproteobacteria
Xanthomonadaceae bacterium NML91-0213 [NWQL]
727158
727083
-
Glu
CTC
[ENA]
¡û
>W1810692787
QLKV01000006
Gammaproteobacteria
Thermomonas haemolytica HAMBI_2467 [QLKV]
50453
50528
+
Glu
CTC
[ENA]
¡û
>W1511348449
JRKJ01000005
Gammaproteobacteria
Lysobacter dokdonensis DS-58 [JRKJ]
171611
171536
-
Glu
CTC
[ENA]
¡û
>W1511582567
LASZ01000009
Gammaproteobacteria
Luteimonas sp. FCS-9 [LASZ]
38327
38402
+
Glu
CTC
[ENA]
¡û
>C161052030
CP013140
Gammaproteobacteria
Lysobacter enzymogenes C3 [CP013140]
3554537
3554612
+
Glu
CTC
[Ensembl]
¡û
>W1610027258
AVPS01000005
Gammaproteobacteria
Lysobacter concretionis Ko07 = DSM 16239 [AVPS]
361592
361667
+
Glu
CTC
[ENA]
¡û
>W1610547648
JUKH01000011
Gammaproteobacteria
Luteimonas abyssi [JUKH]
115998
116073
+
Glu
CTC
[ENA]
¡û
>W1710023492
AVPS01000005
Gammaproteobacteria
Lysobacter concretionis Ko07 = DSM 16239 [AVPS]
361592
361667
+
Glu
CTC
[ENA]
¡û
>W1710529759
FNOG01000003
Gammaproteobacteria
Lysobacter enzymogenes [FNOG]
99350
99275
-
Glu
CTC
[ENA]
¡û
>W1710531696
FNPT01000001
Gammaproteobacteria
Lysobacter sp. yr284 [FNPT]
662764
662839
+
Glu
CTC
[ENA]
¡û
>W1710582967
FQUK01000004
Gammaproteobacteria
Thermomonas hydrothermalis [FQUK]
18933
18858
-
Glu
CTC
[ENA]
¡û
>W1710650893
JUKH01000011
Gammaproteobacteria
Luteimonas abyssi [JUKH]
115998
116073
+
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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