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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.277360 (39 seq.)
>W131176283
ARJX01000044
Betaproteobacteria
Aromatoleum toluclasticum ATCC 700605 [ARJX]
198160
198085
-
His
GTG
[ENA]
¡û
>W1711504164
MKUH01000014
Betaproteobacteria
Candidatus Accumulibacter sp. 66-26 [MKUH]
121406
121481
+
His
GTG
[ENA]
¡û
>W131050803
AMXC01000002
Betaproteobacteria
Thauera sp. 63 [AMXC]
234272
234197
-
His
GTG
[ENA]
¡û
>W131050918
AMXE01000007
Betaproteobacteria
Thauera linaloolentis 47Lol = DSM 12138 [AMXE]
8271
8196
-
His
GTG
[ENA]
¡û
>WENV180297986
OBJA01130408
[OBJA] soil metagenome; sediment, water from around vicinity
558
483
-
His
GTG
[ENA]
¡û
>WENV181221644
OFCW01000240
[OFCW] microbial mat metagenome; Microbial Mat
12681
12756
+
His
GTG
[ENA]
¡û
>WENV181834832
OGVG01001980
[OGVG] freshwater metagenome; freshwater
497
422
-
His
GTG
[ENA]
¡û
>WENV181841425
OGVR01030329
[OGVR] freshwater metagenome; freshwater
329
404
+
His
GTG
[ENA]
¡û
>W141277625
JAET01000001
Betaproteobacteria
Dechloromonas agitata is5 [JAET]
2382584
2382659
+
His
GTG
[ENA]
¡û
>WENV170000201
AERA01023750
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
77
2
-
His
GTG
[ENA]
¡û
>WENV170573165
FLYJ01002214
[FLYJ] hot springs metagenome; Sediment
1249
1324
+
His
GTG
[ENA]
¡û
>WENV170651706
JRYG01000640
[JRYG] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
15770
15845
+
His
GTG
[ENA]
¡û
>WENV170652693
JRYH01015665
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
3375
3300
-
His
GTG
[ENA]
¡û
>WENV170654851
JRYL01039720
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
135
210
+
His
GTG
[ENA]
¡û
>W141561730
JHYR01000014
Betaproteobacteria
Thauera linaloolentis 47Lol = DSM 12138 [JHYR]
8535
8460
-
His
GTG
[ENA]
¡û
>W1911114381
NOIH01000018
Betaproteobacteria
Thauera sp. KNDSS-Mac4 [NOIH]
16049
15974
-
His
GTG
[ENA]
¡û
>W1810005512
BFBP01000014
Betaproteobacteria
Azospira sp. I13 [BFBP]
164591
164516
-
His
GTG
[ENA]
¡û
>W2010726160
JACIET010000001
Betaproteobacteria
Niveibacterium umoris DSM 106739 [JACIET]
262565
262640
+
His
GTG
[ENA]
¡û
>W2011008965
NOIH01000018
Betaproteobacteria
Thauera sp. KNDSS-Mac4 [NOIH]
16049
15974
-
His
GTG
[ENA]
¡û
>W2012156949
VUYQ01000003
Betaproteobacteria
Dechloromonas sp. CZR5 [VUYQ]
517873
517798
-
His
GTG
[ENA]
¡û
>W2012437826
WTVG01000039
Betaproteobacteria
Aromatoleum anaerobium LuFRes1 [WTVG]
33271
33346
+
His
GTG
[ENA]
¡û
>W2012438012
WTVK01000004
Betaproteobacteria
Aromatoleum evansii KB740 [WTVK]
30452
30377
-
His
GTG
[ENA]
¡û
>W2012438150
WTVN01000001
Betaproteobacteria
Aromatoleum toluvorans Td21 [WTVN]
271393
271318
-
His
GTG
[ENA]
¡û
>W2012438327
WTVQ01000014
Betaproteobacteria
Aromatoleum diolicum 22Lin [WTVQ]
7117
7042
-
His
GTG
[ENA]
¡û
>W2012438379
WTVR01000021
Betaproteobacteria
Aromatoleum petrolei ToN1 [WTVR]
36057
35982
-
His
GTG
[ENA]
¡û
>W2012439769
WUAF01000005
Betaproteobacteria
Azoarcus sp. HKLI-1 [WUAF]
111775
111850
+
His
GTG
[ENA]
¡û
>W2110496481
JAFGZA010000011
Betaproteobacteria
Niveibacterium umoris KACC 17062 [JAFGZA]
2360875
2360800
-
His
GTG
[ENA]
¡û
>C211124048
CP059560
Betaproteobacteria
Aromatoleum petrolei ToN1 [CP059560]
862975
862900
-
His
GTG
-
¡û
>C211193278
CP064781
Betaproteobacteria
Azospira restricta DSM 18626 [CP064781]
2485558
2485633
+
His
GTG
-
¡û
>C211283711
CP071060
Betaproteobacteria
Niveibacterium sp. HC41 [CP071060]
1283054
1283129
+
His
GTG
-
¡û
>W2110761781
QVLR01000107
Betaproteobacteria
Azoarcus sp. Aa7 [QVLR]
283202
283277
+
His
GTG
[ENA]
¡û
>W2110804643
WYCU01000004
Betaproteobacteria
Azonexaceae bacterium s22 [WYCU]
25164
25239
+
His
GTG
[ENA]
¡û
>W2110804692
WYCV01000004
Betaproteobacteria
Azonexaceae bacterium t15 [WYCV]
25164
25239
+
His
GTG
[ENA]
¡û
>C241385229
OW011623
Betaproteobacteria
Thauera sp. PIV-1 Piv1 [OW011623]
3291338
3291263
-
His
GTG
-
¡û
>WENV11100559
AERA01023750
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
77
2
-
His
GTG
[ENA]
¡û
>W1511686474
LFRJ01000015
Betaproteobacteria
Thauera humireducens SgZ-1 [LFRJ]
2201274
2201199
-
His
GTG
[ENA]
¡û
>C161075130
CP014646
Betaproteobacteria
Thauera humireducens SgZ-1 [CP014646]
574401
574326
-
His
GTG
[Ensembl]
¡û
>W1610071711
BCUG01000038
Betaproteobacteria
Thauera butanivorans NBRC 103042 [BCUG]
22306
22231
-
His
GTG
[ENA]
¡û
>W1710068913
BCUG01000038
Betaproteobacteria
Thauera butanivorans NBRC 103042 [BCUG]
22306
22231
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK