This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.277439 (36 seq.)
>W1710864806
LMGE01000001
Gammaproteobacteria
Lysobacter sp. Root559 [LMGE]
249698
249773
+
Glu
CTC
[ENA]
¡û
>W1710865490
LMGS01000001
Gammaproteobacteria
Lysobacter sp. Root604 [LMGS]
1577914
1577989
+
Glu
CTC
[ENA]
¡û
>W1710868953
LMJN01000002
Gammaproteobacteria
Lysobacter sp. Root96 [LMJN]
840559
840634
+
Glu
CTC
[ENA]
¡û
>W1710868990
LMJO01000001
Gammaproteobacteria
Lysobacter sp. Root983 [LMJO]
968334
968409
+
Glu
CTC
[ENA]
¡û
>W1711424191
MIDW01000019
Gammaproteobacteria
Xanthomonadales bacterium RIFOXYD1_FULL_69_11 [MIDW]
33728
33653
-
Glu
CTC
[ENA]
¡û
>WENV181193222
OEPS011618299
[OEPS] soil metagenome; soil
18
93
+
Glu
TTC
[ENA]
¡û
>WENV170574041
FLYM01000734
[FLYM] hot springs metagenome; Sediment
786
711
-
Glu
CTC
[ENA]
¡û
>WENV170595372
FUFK011753566
[FUFK] metagenome; unknown
7
82
+
Glu
CTC
[ENA]
¡û
>WENV170991083
MWWA01107859
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
303
378
+
Glu
CTC
[ENA]
¡û
>W1810860367
QTSU01000001
Gammaproteobacteria
Lysobacter silvisoli zong2l5 [QTSU]
1621124
1621199
+
Glu
CTC
[ENA]
¡û
>W2011328182
QXJI01000001
Gammaproteobacteria
Lysobacter sp. C8-1 [QXJI]
1145340
1145415
+
Glu
CTC
[ENA]
¡û
>W2011430436
RIBS01000002
Gammaproteobacteria
Lysobacter sp. ZS60 [RIBS]
313179
313104
-
Glu
CTC
[ENA]
¡û
>W2011687886
SRZZ01000002
Gammaproteobacteria
Luteimonas sp. 1.1416 [SRZZ]
337804
337879
+
Glu
CTC
[ENA]
¡û
>W2012081657
VLKP01000003
Gammaproteobacteria
Lysobacter ruishenii CGMCC 1.10136 [VLKP]
67943
67868
-
Glu
CTC
[ENA]
¡û
>W2110669347
JAIEUJ010000002
Gammaproteobacteria
Lysobacter sp. GW1-59 [JAIEUJ]
68032
68107
+
Glu
CTC
[ENA]
¡û
>W2110690272
JAINZW010000004
Gammaproteobacteria
Lysobacter sp. 13A [JAINZW]
143426
143351
-
Glu
CTC
[ENA]
¡û
>C211178921
CP063656
Gammaproteobacteria
Lysobacter sp. H21R20 [CP063656]
1906978
1907053
+
Glu
CTC
-
¡û
>C211178969
CP063657
Gammaproteobacteria
Lysobacter sp. H23M41 [CP063657]
1813672
1813747
+
Glu
CTC
-
¡û
>C211179017
CP063658
Gammaproteobacteria
Lysobacter sp. H23M47 [CP063658]
1830030
1830105
+
Glu
CTC
-
¡û
>C211180148
CP063772
Gammaproteobacteria
Lysobacter sp. H21R4 [CP063772]
1820474
1820549
+
Glu
CTC
-
¡û
>C211425602
OU015430
Gammaproteobacteria
Lysobacter sp. CECT 30171 [OU015430]
1734428
1734503
+
Glu
CTC
-
¡û
>C231266494
CP089924
Gammaproteobacteria
Lysobacter sp. 5GHs7-4 [CP089924]
3091502
3091577
+
Glu
CTC
-
¡û
>W1511511121
JXSS01000013
Gammaproteobacteria
Lysobacter sp. A03 [JXSS]
6449
6524
+
Glu
CTC
[ENA]
¡û
>W1610027317
AVPT01000044
Gammaproteobacteria
Lysobacter arseniciresistens ZS79 [AVPT]
13842
13917
+
Glu
CTC
[ENA]
¡û
>W1610027333
AVPU01000004
Gammaproteobacteria
Lysobacter daejeonensis GH1-9 [AVPU]
32244
32169
-
Glu
CTC
[ENA]
¡û
>W1610727152
LMGE01000001
Gammaproteobacteria
Lysobacter sp. Root559 [LMGE]
249698
249773
+
Glu
CTC
[ENA]
¡û
>W1610727836
LMGS01000001
Gammaproteobacteria
Lysobacter sp. Root604 [LMGS]
1577914
1577989
+
Glu
CTC
[ENA]
¡û
>W1610728456
LMHF01000012
Gammaproteobacteria
Lysobacter sp. Root667 [LMHF]
178327
178402
+
Glu
CTC
[ENA]
¡û
>W1610729925
LMIK01000001
Gammaproteobacteria
Lysobacter sp. Root76 [LMIK]
353856
353931
+
Glu
CTC
[ENA]
¡û
>W1610730955
LMJF01000001
Gammaproteobacteria
Lysobacter sp. Root916 [LMJF]
1577577
1577652
+
Glu
CTC
[ENA]
¡û
>W1610731299
LMJN01000002
Gammaproteobacteria
Lysobacter sp. Root96 [LMJN]
840559
840634
+
Glu
CTC
[ENA]
¡û
>W1610731336
LMJO01000001
Gammaproteobacteria
Lysobacter sp. Root983 [LMJO]
968334
968409
+
Glu
CTC
[ENA]
¡û
>W1710023551
AVPT01000044
Gammaproteobacteria
Lysobacter arseniciresistens ZS79 [AVPT]
13842
13917
+
Glu
CTC
[ENA]
¡û
>W1710023567
AVPU01000004
Gammaproteobacteria
Lysobacter daejeonensis GH1-9 [AVPU]
32244
32169
-
Glu
CTC
[ENA]
¡û
>W1710567410
FOSS01000003
Gammaproteobacteria
Lysobacter sp. cf310 [FOSS]
636758
636833
+
Glu
CTC
[ENA]
¡û
>W1710601707
FUXP01000001
Gammaproteobacteria
Lysobacter spongiicola DSM 21749 [FUXP]
594094
594169
+
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK