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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.277478 (6 seq.)
>W1910733608
MHIU01000044
Unclassified
Candidatus Colwellbacteria bacterium RIFCSPHIGHO2_02_FULL_43_15 [MHIU]
14578
14501
-
Asp
GTC
[ENA]
¡û
>W1910733634
MHIW01000008
Unclassified
Candidatus Colwellbacteria bacterium RIFCSPHIGHO2_12_FULL_43_12 [MHIW]
1304
1227
-
Asp
GTC
[ENA]
¡û
>W1910733832
MHJB01000019
Unclassified
Candidatus Colwellbacteria bacterium RIFCSPLOWO2_12_FULL_43_11 [MHJB]
6053
6130
+
Asp
GTC
[ENA]
¡û
>W2010867038
MHIU01000044
Unclassified
Candidatus Colwellbacteria bacterium RIFCSPHIGHO2_02_FULL_43_15 [MHIU]
14578
14501
-
Asp
GTC
[ENA]
¡û
>W2010867064
MHIW01000008
Unclassified
Candidatus Colwellbacteria bacterium RIFCSPHIGHO2_12_FULL_43_12 [MHIW]
1304
1227
-
Asp
GTC
[ENA]
¡û
>W2010867262
MHJB01000019
Unclassified
Candidatus Colwellbacteria bacterium RIFCSPLOWO2_12_FULL_43_11 [MHJB]
6053
6130
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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