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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.277535 (84 seq.)
>W1711284714
LZRK01000002
Actinomycetota
Actinomyces vulturis VUL7 [LZRK]
423225
423150
-
Thr
TGT
[ENA]
¡û
>W131222765
AUBN01000012
Actinomycetota
Actinomyces gerencseriae DSM 6844 [AUBN]
21148
21073
-
Thr
TGT
[ENA]
¡û
>WENV180697768
ODDE01004220
[ODDE] human metagenome; G_DNA_Supragingival plaque
2315
2240
-
Thr
TGT
[ENA]
¡û
>WENV180728592
ODGU01067819
[ODGU] human metagenome; G_DNA_Supragingival plaque
348
273
-
Thr
TGT
[ENA]
¡û
>WENV180732837
ODGY01005221
[ODGY] human metagenome; G_DNA_Supragingival plaque
1157
1232
+
Thr
TGT
[ENA]
¡û
>WENV180734606
ODGZ01014617
[ODGZ] human metagenome; G_DNA_Supragingival plaque
1746
1821
+
Thr
TGT
[ENA]
¡û
>WENV180739037
ODHD01003335
[ODHD] human metagenome; G_DNA_Supragingival plaque
2487
2412
-
Thr
TGT
[ENA]
¡û
>WENV180750751
ODHS01007348
[ODHS] human metagenome; G_DNA_Supragingival plaque
1236
1311
+
Thr
TGT
[ENA]
¡û
>WENV180777445
ODIL01006864
[ODIL] human metagenome; G_DNA_Supragingival plaque
600
675
+
Thr
TGT
[ENA]
¡û
>WENV180778297
ODIM01002970
[ODIM] human metagenome; G_DNA_Supragingival plaque
1824
1899
+
Thr
TGT
[ENA]
¡û
>WENV180778552
ODIM01014842
[ODIM] human metagenome; G_DNA_Supragingival plaque
263
188
-
Thr
TGT
[ENA]
¡û
>WENV180781812
ODIP01004632
[ODIP] human metagenome; G_DNA_Supragingival plaque
2479
2404
-
Thr
TGT
[ENA]
¡û
>WENV180787764
ODIS01014372
[ODIS] human metagenome; G_DNA_Supragingival plaque
1608
1683
+
Thr
TGT
[ENA]
¡û
>WENV180797243
ODJB01039935
[ODJB] human metagenome; G_DNA_Supragingival plaque
1042
1117
+
Thr
TGT
[ENA]
¡û
>WENV180801111
ODJD01008068
[ODJD] human metagenome; G_DNA_Supragingival plaque
1250
1175
-
Thr
TGT
[ENA]
¡û
>WENV180804597
ODJG01006842
[ODJG] human metagenome; G_DNA_Supragingival plaque
1161
1236
+
Thr
TGT
[ENA]
¡û
>WENV180814041
ODJO01005819
[ODJO] human metagenome; G_DNA_Supragingival plaque
5530
5455
-
Thr
TGT
[ENA]
¡û
>WENV180822616
ODJT01027726
[ODJT] human metagenome; G_DNA_Supragingival plaque
16
91
+
Thr
TGT
[ENA]
¡û
>WENV180833327
ODKC01031048
[ODKC] human metagenome; G_DNA_Supragingival plaque
574
649
+
Thr
TGT
[ENA]
¡û
>WENV180834322
ODKD01011836
[ODKD] human metagenome; G_DNA_Supragingival plaque
1159
1234
+
Thr
TGT
[ENA]
¡û
>WENV180836436
ODKE01184355
[ODKE] human metagenome; G_DNA_Supragingival plaque
51
126
+
Thr
TGT
[ENA]
¡û
>WENV180842668
ODKM01119983
[ODKM] human metagenome; G_DNA_Buccal mucosa
49
124
+
Thr
TGT
[ENA]
¡û
>WENV180846852
ODKT01026025
[ODKT] human metagenome; G_DNA_Supragingival plaque
928
853
-
Thr
TGT
[ENA]
¡û
>WENV180881521
ODMA01002021
[ODMA] human metagenome; G_DNA_Supragingival plaque
803
728
-
Thr
TGT
[ENA]
¡û
>WENV180889277
ODMN01024756
[ODMN] human metagenome; G_DNA_Supragingival plaque
78
3
-
Thr
TGT
[ENA]
¡û
>WENV180924575
ODTK01007897
[ODTK] human metagenome; G_DNA_Supragingival plaque
2454
2379
-
Thr
TGT
[ENA]
¡û
>WENV180927719
ODTM01002820
[ODTM] human metagenome; G_DNA_Supragingival plaque
5601
5526
-
Thr
TGT
[ENA]
¡û
>WENV180933566
ODTR01000590
[ODTR] human metagenome; G_DNA_Supragingival plaque
5551
5476
-
Thr
TGT
[ENA]
¡û
>WENV180934796
ODTS01003052
[ODTS] human metagenome; G_DNA_Subgingival plaque
1101
1176
+
Thr
TGT
[ENA]
¡û
>WENV180938801
ODTX01007349
[ODTX] human metagenome; G_DNA_Supragingival plaque
2500
2425
-
Thr
TGT
[ENA]
¡û
>WENV180944348
ODUC01014680
[ODUC] human metagenome; G_DNA_Supragingival plaque
1893
1968
+
Thr
TGT
[ENA]
¡û
>WENV180944404
ODUC01016451
[ODUC] human metagenome; G_DNA_Supragingival plaque
1230
1305
+
Thr
TGT
[ENA]
¡û
>WENV180958376
ODUL01003538
[ODUL] human metagenome; G_DNA_Supragingival plaque
2502
2427
-
Thr
TGT
[ENA]
¡û
>WENV180964543
ODUO01004456
[ODUO] human metagenome; G_DNA_Supragingival plaque
1096
1171
+
Thr
TGT
[ENA]
¡û
>WENV180964638
ODUO01007663
[ODUO] human metagenome; G_DNA_Supragingival plaque
1338
1263
-
Thr
TGT
[ENA]
¡û
>WENV180973416
ODUW01005065
[ODUW] human metagenome; G_DNA_Supragingival plaque
261
336
+
Thr
TGT
[ENA]
¡û
>WENV180981410
ODVE01020539
[ODVE] human metagenome; G_DNA_Supragingival plaque
1236
1311
+
Thr
TGT
[ENA]
¡û
>WENV180983626
ODVF01024737
[ODVF] human metagenome; G_DNA_Supragingival plaque
1158
1233
+
Thr
TGT
[ENA]
¡û
>WENV180987018
ODVK01003265
[ODVK] human metagenome; G_DNA_Supragingival plaque
1239
1314
+
Thr
TGT
[ENA]
¡û
>WENV181003679
ODVX01023197
[ODVX] human metagenome; G_DNA_Supragingival plaque
771
846
+
Thr
TGT
[ENA]
¡û
>WENV181008531
ODWE01007055
[ODWE] human metagenome; G_DNA_Supragingival plaque
2502
2427
-
Thr
TGT
[ENA]
¡û
>WENV181012612
ODWK01002343
[ODWK] human metagenome; G_DNA_Supragingival plaque
1672
1747
+
Thr
TGT
[ENA]
¡û
>WENV181019657
ODWU01008991
[ODWU] human metagenome; G_DNA_Supragingival plaque
1882
1957
+
Thr
TGT
[ENA]
¡û
>WENV181029687
ODXF01001938
[ODXF] human metagenome; G_DNA_Supragingival plaque
3559
3634
+
Thr
TGT
[ENA]
¡û
>WENV181029801
ODXF01004458
[ODXF] human metagenome; G_DNA_Supragingival plaque
1851
1926
+
Thr
TGT
[ENA]
¡û
>WENV181050152
ODYD01007501
[ODYD] human metagenome; G_DNA_Supragingival plaque
2454
2379
-
Thr
TGT
[ENA]
¡û
>WENV181063450
ODYP01000880
[ODYP] human metagenome; G_DNA_Supragingival plaque
11860
11935
+
Thr
TGT
[ENA]
¡û
>WENV181067532
ODZI01024428
[ODZI] human metagenome; G_DNA_Supragingival plaque
404
329
-
Thr
TGT
[ENA]
¡û
>WENV181070822
OEAE01012461
[OEAE] human metagenome; G_DNA_Supragingival plaque
1164
1239
+
Thr
TGT
[ENA]
¡û
>WENV181076928
OEAP01017958
[OEAP] human metagenome; G_DNA_Supragingival plaque
1163
1238
+
Thr
TGT
[ENA]
¡û
>WENV181080371
OEAS01043614
[OEAS] human metagenome; G_DNA_Supragingival plaque
377
302
-
Thr
TGT
[ENA]
¡û
>WENV181083377
OEAV01006152
[OEAV] human metagenome; G_DNA_Supragingival plaque
2474
2399
-
Thr
TGT
[ENA]
¡û
>WENV181090787
OEBC01003666
[OEBC] human metagenome; G_DNA_Supragingival plaque
3197
3272
+
Thr
TGT
[ENA]
¡û
>WENV181107487
OEEI01008917
[OEEI] human metagenome; G_DNA_Supragingival plaque
1764
1839
+
Thr
TGT
[ENA]
¡û
>WENV181121750
OEFL01017204
[OEFL] human metagenome; G_DNA_Supragingival plaque
1157
1232
+
Thr
TGT
[ENA]
¡û
>WENV181124256
OEFQ01035566
[OEFQ] human metagenome; G_DNA_Supragingival plaque
278
203
-
Thr
TGT
[ENA]
¡û
>WENV181138044
OEGJ01085359
[OEGJ] human metagenome; G_DNA_Supragingival plaque
56
131
+
Thr
TGT
[ENA]
¡û
>WENV181143812
OEHM01011717
[OEHM] human metagenome; G_DNA_Supragingival plaque
1139
1214
+
Thr
TGT
[ENA]
¡û
>WENV181146446
OEHQ01005911
[OEHQ] human metagenome; G_DNA_Supragingival plaque
2478
2403
-
Thr
TGT
[ENA]
¡û
>WENV181152765
OEIA01005741
[OEIA] human metagenome; G_DNA_Supragingival plaque
2480
2405
-
Thr
TGT
[ENA]
¡û
>WENV181156197
OEIE01005098
[OEIE] human metagenome; G_DNA_Supragingival plaque
1159
1234
+
Thr
TGT
[ENA]
¡û
>WENV181158962
OEIH01023124
[OEIH] human metagenome; G_DNA_Supragingival plaque
638
713
+
Thr
TGT
[ENA]
¡û
>WENV181178211
OEJS01096661
[OEJS] human metagenome; G_DNA_Supragingival plaque
51
126
+
Thr
TGT
[ENA]
¡û
>WENV181179773
OEJT01016975
[OEJT] human metagenome; G_DNA_Supragingival plaque
451
376
-
Thr
TGT
[ENA]
¡û
>WENV181180732
OEJU01000930
[OEJU] human metagenome; G_DNA_Supragingival plaque
2483
2408
-
Thr
TGT
[ENA]
¡û
>WENV181182379
OEJV01007821
[OEJV] human metagenome; G_DNA_Supragingival plaque
1971
2046
+
Thr
TGT
[ENA]
¡û
>WENV182809813
OJWS01003267
[OJWS] human gut metagenome; human gut
450
525
+
Thr
TGT
[ENA]
¡û
>C191208637
LR134357
Actinomycetota
Actinomyces israelii NCTC12972 [LR134357]
2016024
2015949
-
Thr
TGT
-
¡û
>W141779314
JONS01000068
Actinomycetota
Actinomyces israelii DSM 43320 [JONS]
11072
10997
-
Thr
TGT
[ENA]
¡û
>W1810115682
PHNC01000031
Actinomycetota
Streptomyces orinoci NRRL B-3379 [PHNC]
838117
838190
+
Thr
TGT
[ENA]
¡û
>W2011506208
RYFV01000032
Actinomycetota
Actinomyces oricola R5292 [RYFV]
13144
13219
+
Thr
TGT
[ENA]
¡û
>W2011674343
SPQV01000001
Actinomycetota
Actinomyces sp. dk752 [SPQV]
117534
117459
-
Thr
TGT
[ENA]
¡û
>W2011757202
UAPQ01000007
Actinomycetota
Actinomyces bovis NCTC11535 [UAPQ]
200265
200190
-
Thr
TGT
[ENA]
¡û
>W2110190692
JABWGY010000008
Actinomycetota
Actinomyces sp. ZJ750 [JABWGY]
125151
125226
+
Thr
TGT
[ENA]
¡û
>W2110246419
JACOQB010000009
Actinomycetota
Actinomyces sp. zg-987 [JACOQB]
84207
84282
+
Thr
TGT
[ENA]
¡û
>W2110246484
JACOQC010000008
Actinomycetota
Actinomyces sp. zg-993 [JACOQC]
84238
84313
+
Thr
TGT
[ENA]
¡û
>C211198748
CP065027
Actinomycetota
Actinomyces sp. zg-993 [CP065027]
198631
198706
+
Thr
TGT
-
¡û
>C211232732
CP066802
Actinomycetota
Actinomyces weissii CCUG 61299 [CP066802]
245896
245971
+
Thr
TGT
-
¡û
>C241027412
CP025249
Actinomycetota
Actinomyces sp. 432 [CP025249]
2948755
2948680
-
Thr
TGT
-
¡û
>C241253374
CP124548
Actinomycetota
Actinomyces israelii F0345 [CP124548]
3569632
3569558
-
Thr
TGT
-
¡û
>C241285313
CP128646
Actinomycetota
Actinomyces massiliensis F0489 [CP128646]
359261
359336
+
Thr
TGT
-
¡û
>W121081440
AKFT01000158
Actinomycetota
Actinomyces massiliensis F0489 [AKFT]
23607
23682
+
Thr
TGT
[ENA]
¡û
>W121084603
AKIO01000010
Actinomycetota
Actinomyces massiliensis 4401292 [AKIO]
144717
144792
+
Thr
TGT
[ENA]
¡û
>W1611042499
LZRK01000002
Actinomycetota
Actinomyces vulturis VUL7 [LZRK]
423225
423150
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK