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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.277538 (9 seq.)
>WENV183662161
ORJL010170704
[ORJL] groundwater metagenome; groundwater
1080
1157
+
Pro
CGG
[ENA]
¡û
>WENV183665941
ORJL010505572
[ORJL] groundwater metagenome; groundwater
1049
972
-
Pro
CGG
[ENA]
¡û
>WENV183669492
ORJL010846896
[ORJL] groundwater metagenome; groundwater
10
87
+
Pro
CGG
[ENA]
¡û
>WENV183673192
ORJL011253819
[ORJL] groundwater metagenome; groundwater
73
150
+
Pro
CGG
[ENA]
¡û
>WENV183688169
ORMF011246822
[ORMF] groundwater metagenome; groundwater
402
325
-
Pro
CGG
[ENA]
¡û
>WENV183688170
ORMF011247090
[ORMF] groundwater metagenome; groundwater
537
460
-
Pro
CGG
[ENA]
¡û
>W1910743436
MHYU01000050
Planctomycetota
Planctomycetes bacterium RIFCSPHIGHO2_12_42_15 [MHYU]
1945
2022
+
Pro
CGG
[ENA]
¡û
>W2010876868
MHYU01000050
Planctomycetota
Planctomycetes bacterium RIFCSPHIGHO2_12_42_15 [MHYU]
1945
2022
+
Pro
CGG
[ENA]
¡û
>C211002168
AP021856
Unclassified
Candidatus Brocadia pituitae [AP021856]
944009
943932
-
Pro
CGG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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