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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.277573 (76 seq.)
>W1710860184
LMCR01000012
Alphaproteobacteria
Devosia sp. Root105 [LMCR]
294874
294799
-
Lys
CTT
[ENA]
¡û
>W1710861938
LMEA01000007
Alphaproteobacteria
Devosia sp. Root413D1 [LMEA]
280124
280199
+
Lys
CTT
[ENA]
¡û
>W1711385158
MEDU01000037
Alphaproteobacteria
Devosia sp. SCN 66-27 [MEDU]
17
92
+
Lys
CTT
[ENA]
¡û
>W1711385190
MEDU01000193
Alphaproteobacteria
Devosia sp. SCN 66-27 [MEDU]
81
6
-
Lys
CTT
[ENA]
¡û
>W1711504887
MKUZ01000018
Alphaproteobacteria
Devosia sp. 66-22 [MKUZ]
289298
289373
+
Lys
CTT
[ENA]
¡û
>W1711504954
MKVB01000001
Alphaproteobacteria
Devosia sp. 66-14 [MKVB]
759913
759838
-
Lys
CTT
[ENA]
¡û
>W131160351
AQWM01000034
Alphaproteobacteria
Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896 [AQWM]
32042
32117
+
Lys
CTT
[ENA]
¡û
>WENV180016324
FSUR01000041
[FSUR] metagenome; soil
625
550
-
Lys
CTT
[ENA]
¡û
>WENV180016555
FSVH01000155
[FSVH] metagenome; soil
107493
107568
+
Lys
CTT
[ENA]
¡û
>WENV180018592
FSZW01000082
[FSZW] metagenome; soil
85
10
-
Lys
CTT
[ENA]
¡û
>WENV180020601
FTCZ01007100
[FTCZ] metagenome; soil
3911
3836
-
Lys
CTT
[ENA]
¡û
>WENV180020616
FTCZ01007378
[FTCZ] metagenome; soil
10541
10466
-
Lys
CTT
[ENA]
¡û
>WENV180020741
FTDB01000778
[FTDB] metagenome; soil
32018
31943
-
Lys
CTT
[ENA]
¡û
>WENV180020766
FTDB01001258
[FTDB] metagenome; soil
20
95
+
Lys
CTT
[ENA]
¡û
>WENV180020834
FTDB01002621
[FTDB] metagenome; soil
3932
3857
-
Lys
CTT
[ENA]
¡û
>WENV180020851
FTDB01002836
[FTDB] metagenome; soil
9149
9224
+
Lys
CTT
[ENA]
¡û
>WENV180021014
FTDJ01001228
[FTDJ] metagenome; soil
22
97
+
Lys
CTT
[ENA]
¡û
>WENV180022237
FTFU01001919
[FTFU] metagenome; soil
1566
1491
-
Lys
CTT
[ENA]
¡û
>WENV180024882
FTIL01000200
[FTIL] metagenome; soil
1871
1796
-
Lys
CTT
[ENA]
¡û
>WENV180025758
FTIQ01025693
[FTIQ] metagenome; soil
1129
1054
-
Lys
CTT
[ENA]
¡û
>WENV180025841
FTIQ01256634
[FTIQ] metagenome; soil
78
3
-
Lys
CTT
[ENA]
¡û
>WENV180025880
FTIQ01446784
[FTIQ] metagenome; soil
1171
1096
-
Lys
CTT
[ENA]
¡û
>WENV180026754
FTIU01084030
[FTIU] metagenome; soil
1858
1783
-
Lys
CTT
[ENA]
¡û
>WENV180027458
FTIZ01000071
[FTIZ] metagenome; soil
20
95
+
Lys
CTT
[ENA]
¡û
>WENV180027513
FTIZ01002313
[FTIZ] metagenome; soil
99
174
+
Lys
CTT
[ENA]
¡û
>WENV180028104
FTIZ01751720
[FTIZ] metagenome; soil
5251
5326
+
Lys
CTT
[ENA]
¡û
>WENV180028953
FTJI01000023
[FTJI] metagenome; soil
13094
13019
-
Lys
CTT
[ENA]
¡û
>WENV180029692
FTJL01000753
[FTJL] metagenome; soil
1871
1796
-
Lys
CTT
[ENA]
¡û
>WENV180033936
FTKM01002675
[FTKM] metagenome; soil
31404
31479
+
Lys
CTT
[ENA]
¡û
>WENV180034476
FTKR01000022
[FTKR] metagenome; soil
13094
13019
-
Lys
CTT
[ENA]
¡û
>WENV180035182
FTKT01003728
[FTKT] metagenome; soil
6000
6075
+
Lys
CTT
[ENA]
¡û
>W141065483
AQPH01000016
Alphaproteobacteria
Magnetospirillum fulvum MGU-K5 [AQPH]
16470
16545
+
Lys
CTT
[ENA]
¡û
>WENV181227984
OFDN01096317
[OFDN] hot springs metagenome; Water
656
581
-
Lys
CTT
[ENA]
¡û
>W141136700
AWGB01000049
Alphaproteobacteria
Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896 [AWGB]
7659
7584
-
Lys
CTT
[ENA]
¡û
>W141136743
AWGC01000031
Alphaproteobacteria
Asticcacaulis sp. AC402 [AWGC]
45288
45363
+
Lys
CTT
[ENA]
¡û
>W141136788
AWGD01000025
Alphaproteobacteria
Asticcacaulis sp. AC460 [AWGD]
178770
178695
-
Lys
CTT
[ENA]
¡û
>W141136823
AWGE01000008
Alphaproteobacteria
Asticcacaulis sp. AC466 [AWGE]
239274
239349
+
Lys
CTT
[ENA]
¡û
>W141136875
AWGF01000019
Alphaproteobacteria
Asticcacaulis sp. YBE204 [AWGF]
17733
17808
+
Lys
CTT
[ENA]
¡û
>W141241789
CAHP01000001
Alphaproteobacteria
Magnetospirillum molischianum DSM 120 [CAHP]
226714
226639
-
Lys
CTT
[ENA]
¡û
>W141260964
CCAO010000041
Alphaproteobacteria
Devosia sp. DBB001 DDB001 [CCAO]
36617
36692
+
Lys
CTT
[ENA]
¡û
>WENV183697007
OUNJ010000472
[OUNJ] metagenome; soil
14
89
+
Lys
CTT
[ENA]
¡û
>WENV183697117
OUNJ010007149
[OUNJ] metagenome; soil
439
364
-
Lys
CTT
[ENA]
¡û
>WENV183697251
OUNJ010145175
[OUNJ] metagenome; soil
252
177
-
Lys
CTT
[ENA]
¡û
>WENV183697336
OUNJ010435888
[OUNJ] metagenome; soil
78
3
-
Lys
CTT
[ENA]
¡û
>WENV183697383
OUNJ010593669
[OUNJ] metagenome; soil
503
428
-
Lys
CTT
[ENA]
¡û
>WENV183728302
PJTQ01000012
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
225546
225621
+
Lys
CTT
[ENA]
¡û
>WENV183739772
PJUF01000008
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
225546
225621
+
Lys
CTT
[ENA]
¡û
>WENV170229370
CEQG01111722
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
164341
164266
-
Lys
CTT
[ENA]
¡û
>WENV170565502
FJVW01000240
[FJVW] metagenome; soil
2106
2181
+
Lys
CTT
[ENA]
¡û
>C191005615
AP018827
Alphaproteobacteria
Asticcacaulis excentricus M6 [AP018827, AP018828]
320314
320389
+
Lys
CTT
-
¡û
>C191130678
CP034767
Alphaproteobacteria
Devosia sp. 1566 [CP034767]
2212111
2212036
-
Lys
CTT
-
¡û
>W141814303
JQGB01000012
Alphaproteobacteria
Devosia sp. 17-2-E-8 [JQGB]
224468
224543
+
Lys
CTT
[ENA]
¡û
>W1810503509
QBKE01000003
Alphaproteobacteria
Asticcacaulis sp. CF398 [QBKE]
321925
322000
+
Lys
CTT
[ENA]
¡û
>C151079189
CP011300
Alphaproteobacteria
Devosia sp. H5989 [CP011300]
2194603
2194528
-
Lys
CTT
[Ensembl]
¡û
>W2010586332
JABAOL010000001
Alphaproteobacteria
Devosia sp. 919 [JABAOL]
2702078
2702003
-
Lys
CTT
[ENA]
¡û
>W2010586380
JABAOM010000002
Alphaproteobacteria
Devosia sp. 1635 [JABAOM]
233172
233097
-
Lys
CTT
[ENA]
¡û
>W2011688003
SSBC01000020
Alphaproteobacteria
Asticcacaulis sp. 3.1105 [SSBC]
59405
59330
-
Lys
CTT
[ENA]
¡û
>W2110022699
BMFM01000001
Alphaproteobacteria
Youhaiella tibetensis CGMCC 1.12719 [BMFM]
487583
487658
+
Lys
CTT
[ENA]
¡û
>W2110050017
BMZB01000007
Alphaproteobacteria
Asticcacaulis endophyticus KCTC 32296 [BMZB]
980
905
-
Lys
CTT
[ENA]
¡û
>W2110540659
JAGGMI010000014
Alphaproteobacteria
Asticcacaulis solisilvae BE327 [JAGGMI]
93114
93039
-
Lys
CTT
[ENA]
¡û
>C201169791
CP045919
Alphaproteobacteria
Devosia sp. D6-9 [CP045919]
1611832
1611907
+
Lys
CTT
-
¡û
>C211031000
CP018227
Alphaproteobacteria
Kordiimonadales bacterium IMCC3096 [CP018227]
785327
785402
+
Lys
CTT
-
¡û
>C211255065
CP068983
Alphaproteobacteria
Paradevosia shaoguanensis J5-3 [CP068983]
3269075
3269150
+
Lys
CTT
-
¡û
>C231201015
CP084910
Alphaproteobacteria
Asticcacaulis sp. AND118 [CP084910, CP084911]
1016877
1016952
+
Lys
CTT
-
¡û
>C241059313
CP041690
Alphaproteobacteria
Youhaiella tibetensis fig4 [CP041690]
2959505
2959430
-
Lys
CTT
-
¡û
>C241250147
CP123781
Alphaproteobacteria
Minwuia sp. IMCC3009 [CP123781]
2809295
2809370
+
Lys
CTT
-
¡û
>C241250194
CP123782
Alphaproteobacteria
Minwuia sp. IMCC3060 [CP123782]
2862018
2862093
+
Lys
CTT
-
¡û
>C241250268
CP123783
Alphaproteobacteria
Minwuia sp. IMCC3077 [CP123783]
2535111
2535036
-
Lys
CTT
-
¡û
>C241250292
CP123784
Alphaproteobacteria
Minwuia sp. IMCC4030 [CP123784]
3785371
3785446
+
Lys
CTT
-
¡û
>C241292644
CP130044
Alphaproteobacteria
Asticcacaulis sp. ZE23SCel15 [CP130044]
3621158
3621233
+
Lys
CTT
-
¡û
>C11100671
CP002395
Alphaproteobacteria
Asticcacaulis excentricus CB 48 [CP002395, CP002396]
1076992
1077067
+
Lys
CTT
[Ensembl]
¡û
>W11123376
ADUH01000139
Alphaproteobacteria
Asticcacaulis biprosthecium C19 [ADUH]
34237
34162
-
Lys
CTT
[ENA]
¡û
>C161047967
CP012945
Alphaproteobacteria
Devosia sp. A16 [CP012945]
4996585
4996510
-
Lys
CTT
-
¡û
>W1610722530
LMCR01000012
Alphaproteobacteria
Devosia sp. Root105 [LMCR]
294874
294799
-
Lys
CTT
[ENA]
¡û
>W1610724284
LMEA01000007
Alphaproteobacteria
Devosia sp. Root413D1 [LMEA]
280124
280199
+
Lys
CTT
[ENA]
¡û
>W1710540219
FNWO01000014
Alphaproteobacteria
Magnetospirillum fulvum [FNWO]
42785
42710
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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