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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.277617 (82 seq.)
>W1711043861
LRMP01000001
Actinomycetota
Brachybacterium sp. sponge [LRMP]
1230345
1230272
-
Arg
ACG
[ENA]
¡û
>W1711173277
LWCS01000103
Actinomycetota
Mycolicibacterium iranicum [LWCS]
788
715
-
Arg
ACG
[ENA]
¡û
>W1711185721
LWNQ01000004
Actinomycetota
Dermabacter sp. HMSC08H10 [LWNQ]
50911
50986
+
Arg
ACG
[ENA]
¡û
>W1711186242
LWOB01000135
Actinomycetota
Brachybacterium sp. HMSC06H03 [LWOB]
5638
5565
-
Arg
ACG
[ENA]
¡û
>C171060461
CP017297
Actinomycetota
Brachybacterium sp. P6-10-X1 [CP017297]
2222261
2222334
+
Arg
ACG
-
¡û
>C171130948
LT706985
Actinomycetota
Vaginimicrobium propionicum Marseille-P3275 [LT706985]
1698201
1698276
+
Arg
ACG
-
¡û
>W131098110
AORC01000009
Actinomycetota
Brachybacterium muris UCD-AY4 [AORC]
189392
189319
-
Arg
ACG
[ENA]
¡û
>W131206264
ATFO01000002
Actinomycetota
Dermabacter sp. HFH0086 [ATFO]
251439
251514
+
Arg
ACG
[ENA]
¡û
>WENV180312663
OBJZ01000036
[OBJZ] human gut metagenome; fecal sample
165926
166001
+
Arg
ACG
[ENA]
¢þ
>W141055813
AOSS01000164
Actinomycetota
Cutibacterium granulosum DSM 20700 [AOSS]
9014
9089
+
Arg
ACG
[ENA]
¡û
>W141055848
AOST01000015
Actinomycetota
Cutibacterium granulosum TM11 [AOST]
15808
15733
-
Arg
ACG
[ENA]
¡û
>WENV180745613
ODHL01000390
[ODHL] human metagenome; G_DNA_L_Retroauricular crease
6042
5967
-
Arg
ACG
[ENA]
¢þ
>WENV181123253
OEFP01000001
[OEFP] human metagenome; G_DNA_R_Retroauricular crease
195773
195698
-
Arg
ACG
[ENA]
¢þ
>W141203581
AZIS01000004
Actinomycetota
Propionimicrobium sp. BV2F7 [AZIS]
331001
330926
-
Arg
ACG
[ENA]
¡û
>WENV182635882
OJKZ01000003
[OJKZ] metagenome; surface
200936
200861
-
Arg
ACG
[ENA]
¢þ
>WENV182639980
OJLB01000007
[OJLB] metagenome; surface
200936
200861
-
Arg
ACG
[ENA]
¢þ
>WENV182643858
OJLW01001863
[OJLW] metagenome; surface
2225
2150
-
Arg
ACG
[ENA]
¢þ
>WENV182644579
OJLY01000021
[OJLY] metagenome; surface
4776
4851
+
Arg
ACG
[ENA]
¢þ
>WENV182645135
OJLY01003081
[OJLY] metagenome; surface
3735
3810
+
Arg
ACG
[ENA]
¢þ
>WENV182799909
OJTY01000005
[OJTY] human gut metagenome; human gut
42310
42385
+
Arg
ACG
[ENA]
¢þ
>WENV182800715
OJUF01000768
[OJUF] human gut metagenome; human gut
187
262
+
Arg
ACG
[ENA]
¢þ
>WENV182804576
OJUV01002669
[OJUV] human gut metagenome; human gut
769
694
-
Arg
ACG
[ENA]
¢þ
>WENV182807552
OJVY01000002
[OJVY] human gut metagenome; human gut
24221
24296
+
Arg
ACG
[ENA]
¢þ
>WENV182816420
OJZA01000514
[OJZA] human gut metagenome; human gut
6010
5935
-
Arg
ACG
[ENA]
¢þ
>WENV182819759
OKAF01006651
[OKAF] human gut metagenome; human gut
384
459
+
Arg
ACG
[ENA]
¢þ
>WENV182825531
OKCK01000244
[OKCK] human gut metagenome; human gut
10859
10784
-
Arg
ACG
[ENA]
¢þ
>WENV182831671
OKEG01000094
[OKEG] human gut metagenome; human gut
35649
35574
-
Arg
ACG
[ENA]
¢þ
>WENV182835609
OKFO01000274
[OKFO] human gut metagenome; human gut
97
172
+
Arg
ACG
[ENA]
¢þ
>WENV182837417
OKGH01000014
[OKGH] human gut metagenome; human gut
61735
61660
-
Arg
ACG
[ENA]
¢þ
>WENV182839066
OKGZ01001480
[OKGZ] human gut metagenome; human gut
466
541
+
Arg
ACG
[ENA]
¢þ
>WENV182845569
OKJE01000073
[OKJE] human gut metagenome; human gut
43050
42975
-
Arg
ACG
[ENA]
¢þ
>WENV182845915
OKJH01001803
[OKJH] human gut metagenome; human gut
927
852
-
Arg
ACG
[ENA]
¢þ
>WENV182851707
OKLR01000079
[OKLR] human gut metagenome; human gut
5938
5863
-
Arg
ACG
[ENA]
¢þ
>WENV182852202
OKLW01000117
[OKLW] human gut metagenome; human gut
4780
4855
+
Arg
ACG
[ENA]
¢þ
>WENV182852441
OKLY01000075
[OKLY] human gut metagenome; human gut
5704
5629
-
Arg
ACG
[ENA]
¢þ
>WENV182855219
OKMY01000411
[OKMY] human gut metagenome; human gut
11094
11169
+
Arg
ACG
[ENA]
¢þ
>WENV182858681
OKOG01000002
[OKOG] human gut metagenome; human gut
284969
284894
-
Arg
ACG
[ENA]
¢þ
>WENV182863226
OKPS01000002
[OKPS] human gut metagenome; human gut
176877
176802
-
Arg
ACG
[ENA]
¢þ
>WENV183087942
OLJQ01000116
[OLJQ] human gut metagenome; human gut
5325
5250
-
Arg
ACG
[ENA]
¢þ
>W141400426
JDRS01000003
Actinomycetota
Dermabacter hominis 1368 [JDRS]
13474
13399
-
Arg
ACG
[ENA]
¡û
>C181062010
CP022316
Actinomycetota
Brachybacterium avium VR2415 [CP022316]
1305798
1305871
+
Arg
ACG
-
¡û
>C181084704
CP023564
Actinomycetota
Brachybacterium ginsengisoli DCY80 [CP023564]
693218
693145
-
Arg
ACG
-
¡û
>C181199710
CP031356
Actinomycetota
Brachybacterium saurashtrense DSM 23186 [CP031356]
2458885
2458958
+
Arg
ACG
-
¡û
>C181224554
LT906441
Actinomycetota
Cutibacterium granulosum NCTC11865 [LT906441]
340218
340143
-
Arg
ACG
-
¡û
>C181229776
LT985188
Actinomycetota
Micropruina glycogenica [LT985188]
2799512
2799437
-
Arg
ACG
-
¡û
>C191051344
CP027295
Actinomycetota
Brachybacterium sp. SGAir0954 [CP027295]
1198847
1198773
-
Arg
ACG
-
¡û
>W09108384
ABTF01000002
Actinomycetota
Brachybacterium faecium DSM 4810 [ABTF]
537614
537687
+
Arg
ACG
[ENA]
¡û
>W1910321361
FSEE01000013
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 417 [FSEE]
162466
162541
+
Arg
ACG
[ENA]
¡û
>W1910442468
FWFG01000101
Actinomycetota
Brachybacterium nesterenkovii CIP104813 [FWFG]
50239
50165
-
Arg
ACG
[ENA]
¡û
>W1910442475
FWFH01000008
Actinomycetota
Brachybacterium faecium FM_RA_Lac3 [FWFH]
17789
17716
-
Arg
ACG
[ENA]
¡û
>W1910498739
FXXB01000008
Actinomycetota
Brachybacterium massiliense mt5 [FXXB]
957554
957629
+
Arg
ACG
[ENA]
¡û
>W1911076210
NMVI01000001
Actinomycetota
Parenemella sanctibonifatiensis NML 160184 [NMVI]
7723
7797
+
Arg
ACG
[ENA]
¡û
>W1911076263
NMVJ01000001
Actinomycetota
Parenemella sanctibonifatiensis NML 150081 [NMVJ]
946311
946237
-
Arg
ACG
[ENA]
¡û
>W1911203295
NRGR01000021
Actinomycetota
Brachybacterium alimentarium 341_9 [NRGR]
104432
104359
-
Arg
ACG
[ENA]
¡û
>W1911203354
NRGS01000031
Actinomycetota
Brachybacterium alimentarium 908_11 [NRGS]
62024
61951
-
Arg
ACG
[ENA]
¡û
>W1911532909
OIWY01000006
Actinomycetota
Brachybacterium timonense Marseille-P4339 [OIWY]
1571078
1571151
+
Arg
ACG
[ENA]
¡û
>W1911596793
PNHL01000001
Actinomycetota
Brachybacterium sp. UMB0905 [PNHL]
227706
227781
+
Arg
ACG
[ENA]
¡û
>W1911702228
QOCI01000007
Actinomycetota
Brachybacterium paraconglomeratum KCTC 9916 [QOCI]
235795
235722
-
Arg
ACG
[ENA]
¡û
>W1911726640
QSWH01000002
Actinomycetota
Brachybacterium saurashtrense DSM 23186 [QSWH]
283876
283949
+
Arg
ACG
[ENA]
¡û
>W1911765377
QXCP01000010
Actinomycetota
Brachybacterium sp. EE-P12 [QXCP]
27096
27170
+
Arg
ACG
[ENA]
¡û
>W1810187321
PKHM01000004
Actinomycetota
Dermabacter hominis UMB0490 [PKHM]
80760
80685
-
Arg
ACG
[ENA]
¡û
>W1810196908
PNFB01000030
Actinomycetota
Brachybacterium sp. YJGR34 [PNFB]
13514
13587
+
Arg
ACG
[ENA]
¡û
>W1810587378
QFKX01000001
Actinomycetota
Brachybacterium endophyticum M1HQ-2 [QFKX]
673276
673201
-
Arg
ACG
[ENA]
¡û
>W1810756702
QPGF01000031
Actinomycetota
Brachybacterium alimentarium 738_10 [QPGF]
230285
230358
+
Arg
ACG
[ENA]
¡û
>W1810756761
QPGG01000073
Actinomycetota
Brachybacterium alimentarium 862_8 [QPGG]
10822
10749
-
Arg
ACG
[ENA]
¡û
>W1810756796
QPGH01000030
Actinomycetota
Brachybacterium alimentarium 876_9 [QPGH]
74364
74291
-
Arg
ACG
[ENA]
¡û
>W1810756814
QPGI01000005
Actinomycetota
Brachybacterium alimentarium 900_8 [QPGI]
18937
19010
+
Arg
ACG
[ENA]
¡û
>W1810756866
QPGJ01000003
Actinomycetota
Brachybacterium alimentarium 947_11 [QPGJ]
73460
73387
-
Arg
ACG
[ENA]
¡û
>W1810756948
QPGK01000030
Actinomycetota
Brachybacterium alimentarium 962_10 [QPGK]
19182
19255
+
Arg
ACG
[ENA]
¡û
>W1810757146
QPGN01000028
Actinomycetota
Brachybacterium sp. JB7 [QPGN]
6280
6353
+
Arg
ACG
[ENA]
¡û
>W1510021904
BCAK01000010
Actinomycetota
Brachybacterium sp. SW0106-09 [BCAK]
7032
7105
+
Arg
ACG
[ENA]
¡û
>C10101561
CP001643
Actinomycetota
Brachybacterium faecium DSM 4810 [CP001643]
3022695
3022768
+
Arg
ACG
[Ensembl]
¡û
>W11177829
AGBX01000001
Actinomycetota
Brachybacterium squillarum M-6-3 [AGBX]
338612
338685
+
Arg
ACG
[ENA]
¡û
>W121018090
AGSO01000001
Actinomycetota
Brachybacterium paraconglomeratum LC44 [AGSO]
376008
375935
-
Arg
ACG
[ENA]
¡û
>W1610095067
CYUG01000017
Actinomycetota
Dermabacter indicis massiliensis [CYUG]
224078
224153
+
Arg
ACG
[ENA]
¡û
>W1610521584
JNBU01000012
Actinomycetota
Cutibacterium granulosum DSM 20700 [JNBU]
31469
31394
-
Arg
ACG
[ENA]
¡û
>W1610521597
JNBU01000044
Actinomycetota
Cutibacterium granulosum DSM 20700 [JNBU]
9014
9089
+
Arg
ACG
[ENA]
¡û
>W1610885160
LRMP01000001
Actinomycetota
Brachybacterium sp. sponge [LRMP]
1230345
1230272
-
Arg
ACG
[ENA]
¡û
>W1610981882
LWCS01000103
Actinomycetota
Mycolicibacterium iranicum [LWCS]
788
715
-
Arg
ACG
[ENA]
¡û
>W1710097862
CYUG01000017
Actinomycetota
Dermabacter indicis massiliensis [CYUG]
224078
224153
+
Arg
ACG
[ENA]
¡û
>W1710620869
JNBU01000012
Actinomycetota
Cutibacterium granulosum DSM 20700 [JNBU]
31469
31394
-
Arg
ACG
[ENA]
¡û
>W1710620882
JNBU01000044
Actinomycetota
Cutibacterium granulosum DSM 20700 [JNBU]
9014
9089
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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