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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.277619 (20 seq.)
>w018754
AATP01000001
Alphaproteobacteria
Fulvimarina pelagi HTCC2506 [AATP]
418306
418229
-
Phe
GAA
[ENA]
¡û
>WENV182544005
OJBD01011520
[OJBD] seawater metagenome; Sea water
132
57
-
Phe
GAA
[ENA]
¡û
>WENV182557758
OJDK01007876
[OJDK] seawater metagenome; Sea water
769
694
-
Phe
GAA
[ENA]
¡û
>WENV170668188
LADL02001719
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
20837
20912
+
Phe
GAA
[ENA]
¡û
>C181062145
CP022336
Alphaproteobacteria
Sphingorhabdus sp. SMR4y [CP022336]
3155353
3155428
+
Phe
GAA
-
¡û
>C181068254
CP022548
Alphaproteobacteria
Sphingorhabdus sp. YGSMI21 [CP022548]
2052953
2053028
+
Phe
GAA
-
¡û
>C181220375
LT703001
Alphaproteobacteria
Sphingorhabdus sp. Alg231-15 [LT703001, LT703002]
1106001
1105926
-
Phe
GAA
-
¡û
>W1911532509
OGVD01000002
Alphaproteobacteria
Sphingorhabdus sp. EL138 [OGVD]
548437
548512
+
Phe
GAA
[ENA]
¡û
>W1810887324
QUOY01000001
Alphaproteobacteria
Methylovirgula sp. 4M-Z18 [QUOY]
626235
626310
+
Phe
GAA
[ENA]
¡û
>W2011165268
OGVD01000002
Alphaproteobacteria
Sphingorhabdus sp. EL138 [OGVD]
548437
548512
+
Phe
GAA
[ENA]
¡û
>W2011231693
PYIA01000105
Alphaproteobacteria
Sphingopyxis sp. BSNA05 [PYIA]
51798
51723
-
Phe
GAA
[ENA]
¡û
>C211295939
CP071794
Alphaproteobacteria
Parasphingorhabdus sp. JHSY0214 [CP071794]
987324
987249
-
Phe
GAA
-
¡û
>C231232418
CP086727
Alphaproteobacteria
Parasphingorhabdus litoris DSM 22379 [CP086727]
2923464
2923389
-
Phe
GAA
-
¡û
>C241149623
CP051217
Alphaproteobacteria
Parasphingorhabdus halotolerans JK6 [CP051217]
1190397
1190322
-
Phe
GAA
-
¡û
>C161073971
CP014545
Alphaproteobacteria
Sphingorhabdus sp. M41 [CP014545]
2740067
2739992
-
Phe
GAA
[Ensembl]
¡û
>W1610056800
BBWO01000001
Alphaproteobacteria
Fulvimarina pelagi [BBWO]
227321
227246
-
Phe
GAA
[ENA]
¡û
>W1611013500
LXYP01000036
Alphaproteobacteria
Sphingomonadales bacterium EhC05 [LXYP]
17486
17561
+
Phe
GAA
[ENA]
¡û
>WENV078513
AAGA01025781
Fossil microbial community from Whale Fall (the West Antarctic Peninsula Shelf)
322
399
+
Phe
GAA
[ENA]
>W1710053499
BBWO01000001
Alphaproteobacteria
Fulvimarina pelagi [BBWO]
227321
227246
-
Phe
GAA
[ENA]
¡û
>W1710593897
FSQW01000001
Alphaproteobacteria
Parasphingorhabdus marina DSM 22363 [FSQW]
1719288
1719363
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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