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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.277670 (13 seq.)
>C000040
AE000657
Aquificota
Aquifex aeolicus VF5 [AE000657]
450480
450405
-
Phe
GAA
[Ensembl]
¡û
>WENV181223211
OFDC01003163
[OFDC] hot springs metagenome; Water
1230
1158
-
Phe
GAA
[ENA]
¡û
>WENV181409036
OGCH01038079
[OGCH] hot springs metagenome; hot springs
144
217
+
Phe
GAA
[ENA]
¡û
>W08004339
ABHJ01000007
Aquificota
Hydrogenivirga sp. 128-5-R1-1 [ABHJ]
66921
66994
+
Phe
GAA
[ENA]
¡û
>WENV170574078
FLYM01003670
[FLYM] hot springs metagenome; Sediment
5198
5270
+
Phe
GAA
[ENA]
¡û
>W1911493345
OBEN01000001
Aquificota
Hydrogenobacter hydrogenophilus DSM 2913 [OBEN]
62050
61978
-
Phe
GAA
[ENA]
¡û
>W2011154296
OBEN01000001
Aquificota
Hydrogenobacter hydrogenophilus DSM 2913 [OBEN]
62050
61978
-
Phe
GAA
[ENA]
¡û
>W2011392456
RCCJ01000001
Aquificota
Hydrogenivirga caldilitoris DSM 16510 [RCCJ]
1718908
1718835
-
Phe
GAA
[ENA]
¡û
>C211344088
CP076323
Aquificota
Hydrogenobacter thermophilus [CP076323]
125406
125479
+
Phe
GAA
-
¡û
>C211344132
CP076324
Aquificota
Aquificae bacterium [CP076324]
318028
318100
+
Phe
GAA
-
¡û
>C10107883
AP011112
Aquificota
Hydrogenobacter thermophilus TK-6 [AP011112]
686095
686022
-
Phe
GAA
-
¡û
>C10113032
CP001931
Aquificota
Thermocrinis albus DSM 14484 [CP001931]
1479727
1479655
-
Phe
GAA
[Ensembl]
¡û
>C11111356
CP002221
Aquificota
Hydrogenobacter thermophilus TK-6 [CP002221]
686086
686013
-
Phe
GAA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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