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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.277717 (39 seq.)
>WENV180115024
OAPS01099160
[OAPS] marine metagenome; sea water
296
371
+
Phe
GAA
[ENA]
¡û
>WENV181325742
OFLJ01020618
[OFLJ] seawater metagenome; seawater
505
580
+
Phe
GAA
[ENA]
¡û
>WENV181393007
OFRX01030003
[OFRX] seawater metagenome; seawater
391
466
+
Phe
GAA
[ENA]
¡û
>WENV182543106
OJBA01000124
[OJBA] seawater metagenome; Sea water
6888
6813
-
Phe
GAA
[ENA]
¡û
>WENV182550396
OJCA01001145
[OJCA] seawater metagenome; Sea water
3975
4050
+
Phe
GAA
[ENA]
¡û
>WENV182563462
OJEC01000553
[OJEC] seawater metagenome; Sea water
6416
6341
-
Phe
GAA
[ENA]
¡û
>WENV182570281
OJFC01000826
[OJFC] seawater metagenome; Sea water
772
697
-
Phe
GAA
[ENA]
¡û
>WENV182571452
OJFK01000006
[OJFK] seawater metagenome; Sea water
92672
92747
+
Phe
GAA
[ENA]
¡û
>WENV182583797
OJHF01000001
[OJHF] seawater metagenome; Sea water
81690
81615
-
Phe
GAA
[ENA]
¡û
>WENV183058444
OLHR01000064
[OLHR] seawater metagenome; Sea water
23552
23627
+
Phe
GAA
[ENA]
¡û
>WENV183619589
OOFQ01021000
[OOFQ] marine metagenome; seawater
505
580
+
Phe
GAA
[ENA]
¡û
>WENV183625181
OOGF01002986
[OOGF] marine metagenome; seawater
494
419
-
Phe
GAA
[ENA]
¡û
>WENV183629378
OOGP01030556
[OOGP] marine metagenome; seawater
391
466
+
Phe
GAA
[ENA]
¡û
>WENV170010708
APMI01025841
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
233
308
+
Phe
GAA
[ENA]
¡û
>WENV170568127
FLMP01018368
[FLMP] seawater metagenome; seawater
499
424
-
Phe
GAA
[ENA]
¡û
>WENV170880300
MDTC01110504
[MDTC] marine metagenome; seawater
13117
13042
-
Phe
GAA
[ENA]
¡û
>WENV170953172
MEHZ011632493
[MEHZ] marine metagenome; marine surface water
16732
16807
+
Phe
GAA
[ENA]
¡û
>W141557860
JHVM01000006
Betaproteobacteria
Deefgea rivuli DSM 18356 [JHVM]
324210
324285
+
Phe
GAA
[ENA]
¡û
>W141557861
JHVM01000006
Betaproteobacteria
Deefgea rivuli DSM 18356 [JHVM]
324341
324416
+
Phe
GAA
[ENA]
¡û
>W1810068016
PDZG01000004
Betaproteobacteria
Iodobacter sp. BJB302 [PDZG]
57568
57643
+
Phe
GAA
[ENA]
¡û
>W2010686703
JACFXX010000001
Betaproteobacteria
Deefgea sp. CFH1-16 [JACFXX]
1187957
1187882
-
Phe
GAA
[ENA]
¡û
>W2010686704
JACFXX010000001
Betaproteobacteria
Deefgea sp. CFH1-16 [JACFXX]
1187824
1187749
-
Phe
GAA
[ENA]
¡û
>W2011629724
SMBT01000012
Betaproteobacteria
Iodobacter fluviatilis DSM 3764 [SMBT]
57806
57881
+
Phe
GAA
[ENA]
¡û
>W2011825044
UGHR01000006
Betaproteobacteria
Iodobacter fluviatilis NCTC11159 [UGHR]
199147
199072
-
Phe
GAA
[ENA]
¡û
>C211032746
CP025781
Betaproteobacteria
Iodobacter fluviatilis PCH194 [CP025781]
1505416
1505491
+
Phe
GAA
-
¡û
>W2110718037
JAJAWG010000005
Betaproteobacteria
Deefgea sp. H3-26 [JAJAWG]
200164
200239
+
Phe
GAA
[ENA]
¡û
>W2110718038
JAJAWG010000005
Betaproteobacteria
Deefgea sp. H3-26 [JAJAWG]
200297
200372
+
Phe
GAA
[ENA]
¡û
>C211383791
CP081149
Betaproteobacteria
Deefgea sp. D13 [CP081149]
3496891
3496816
-
Phe
GAA
-
¡û
>C211383792
CP081149
Betaproteobacteria
Deefgea sp. D13 [CP081149]
3496758
3496683
-
Phe
GAA
-
¡û
>C211383863
CP081150
Betaproteobacteria
Deefgea sp. D25 [CP081150]
2688460
2688385
-
Phe
GAA
-
¡û
>C211383864
CP081150
Betaproteobacteria
Deefgea sp. D25 [CP081150]
2688329
2688254
-
Phe
GAA
-
¡û
>W2110784324
WLYT01000001
Betaproteobacteria
Deefgea sp. CFH1-16 [WLYT]
1187957
1187882
-
Phe
GAA
[ENA]
¡û
>W2110784325
WLYT01000001
Betaproteobacteria
Deefgea sp. CFH1-16 [WLYT]
1187824
1187749
-
Phe
GAA
[ENA]
¡û
>W2110785991
WOFE01000003
Betaproteobacteria
Deefgea chitinilytica LMG 24817 [WOFE]
350586
350661
+
Phe
GAA
[ENA]
¡û
>W2110785992
WOFE01000003
Betaproteobacteria
Deefgea chitinilytica LMG 24817 [WOFE]
350717
350792
+
Phe
GAA
[ENA]
¡û
>C241165890
CP054143
Betaproteobacteria
Deefgea piscis D17 [CP054143]
837905
837830
-
Phe
GAA
-
¡û
>C241165891
CP054143
Betaproteobacteria
Deefgea piscis D17 [CP054143]
837772
837697
-
Phe
GAA
-
¡û
>W1511552258
JZUG01000016
Betaproteobacteria
Janthinobacterium sp. B9-8 [JZUG]
65783
65708
-
Phe
GAA
[ENA]
¡û
>C161068555
CP014222
Betaproteobacteria
Janthinobacterium sp. B9-8 [CP014222]
3455694
3455769
+
Phe
GAA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK