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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.277748 (38 seq.)
>W1710875363
LMOI01000012
Actinomycetota
Arthrobacter sp. Leaf137 [LMOI]
514868
514943
+
Arg
TCT
[ENA]
¡û
>W1710880262
LMSF01000012
Actinomycetota
Arthrobacter sp. Soil761 [LMSF]
551018
551093
+
Arg
TCT
[ENA]
¡û
>W1710880430
LMSI01000022
Actinomycetota
Arthrobacter sp. Soil764 [LMSI]
32040
31965
-
Arg
TCT
[ENA]
¡û
>W1710909432
LNQM01000002
Actinomycetota
Pseudarthrobacter enclensis [LNQM]
717148
717223
+
Arg
TCT
[ENA]
¡û
>W1710996530
LQBM01000004
Actinomycetota
Nesterenkonia jeotgali [LQBM]
320979
321052
+
Arg
TCT
[ENA]
¡û
>W131172045
ARGQ01000034
Actinomycetota
Arthrobacter sp. 135MFCol5.1 [ARGQ]
466838
466914
+
Arg
TCT
[ENA]
¡û
>W1711372141
MDSS02000001
Actinomycetota
Nesterenkonia sp. PF2B19 [MDSS]
103554
103481
-
Arg
TCT
[ENA]
¡û
>W131252014
CBLL010000086
Actinomycetota
Nesterenkonia massiliensis NP1 [CBLL]
28712
28639
-
Arg
TCT
[ENA]
¡û
>W131089913
AOFD01000002
Actinomycetota
Arthrobacter nitrophenolicus SJCon [AOFD]
111390
111463
+
Arg
TCT
[ENA]
¡û
>W131172181
ARGS01000052
Actinomycetota
Arthrobacter sp. 162MFSha1.1 [ARGS]
258490
258565
+
Arg
TCT
[ENA]
¡û
>W141246965
CAQI01000040
Actinomycetota
Pseudarthrobacter siccitolerans [CAQI]
47459
47384
-
Arg
TCT
[ENA]
¡û
>WENV183729460
PJTQ01042350
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
110
36
-
Arg
TCT
[ENA]
¢þ
>W141426503
JEMO01000012
Actinomycetota
Nesterenkonia sp. AN1 [JEMO]
61322
61249
-
Arg
TCT
[ENA]
¡û
>C181134215
CP026514
Actinomycetota
Arthrobacter sp. PGP41 [CP026514]
2582179
2582256
+
Arg
TCT
-
¡û
>C191188246
CP041187
Actinomycetota
Pseudarthrobacter sp. NIBRBAC000502771 [CP041187]
2893037
2892961
-
Arg
TCT
-
¡û
>C191188523
CP041198
Actinomycetota
Pseudarthrobacter sp. NIBRBAC000502770 [CP041198]
1910043
1910119
+
Arg
TCT
-
¡û
>C09100265
CP001341
Actinomycetota
Pseudarthrobacter chlorophenolicus A6 [CP001341]
2445566
2445641
+
Arg
TCT
[Ensembl]
¡û
>W1810167265
PJII01000016
Actinomycetota
Arthrobacter sp. ZGTC412 [PJII]
75884
75957
+
Arg
TCT
[ENA]
¡û
>W1810167878
PJIV01000005
Actinomycetota
Arthrobacter sp. 9E14 [PJIV]
267251
267326
+
Arg
TCT
[ENA]
¡û
>W1810296139
PTJB01000002
Actinomycetota
Arthrobacter sp. B3 [PTJB]
552409
552483
+
Arg
TCT
[ENA]
¡û
>W1810365244
PVTY01000001
Actinomycetota
Nesterenkonia sandarakina CG 35 [PVTY]
98719
98646
-
Arg
TCT
[ENA]
¡û
>W1810569957
QEHL01000003
Actinomycetota
Pseudarthrobacter sp. AG30 [QEHL]
36111
36035
-
Arg
TCT
[ENA]
¡û
>W1810677224
QKMO01000001
Actinomycetota
Arthrobacter sp. RC1.1 241 [QKMO]
204882
204956
+
Arg
TCT
[ENA]
¡û
>W1810789463
QRGQ01000024
Actinomycetota
Arthrobacter sp. RT-1 [QRGQ]
236733
236659
-
Arg
TCT
[ENA]
¡û
>C11100999
CP002379
Actinomycetota
Pseudarthrobacter phenanthrenivorans Sphe3 [CP002379]
2442501
2442576
+
Arg
TCT
[Ensembl]
¡û
>W1511489609
JWTB01000012
Actinomycetota
Pseudarthrobacter phenanthrenivorans SWC37 [JWTB]
35298
35225
-
Arg
TCT
[ENA]
¡û
>W1511551641
JZTW01000012
Actinomycetota
Pseudarthrobacter chlorophenolicus Mor30.16 [JZTW]
30309
30234
-
Arg
TCT
[ENA]
¡û
>W11172399
AFRW01000085
Actinomycetota
Nesterenkonia sp. F [AFRW]
17000
17073
+
Arg
TCT
[ENA]
¡û
>W1610515414
FMAZ01000002
Actinomycetota
Pseudarthrobacter enclensis [FMAZ]
717148
717223
+
Arg
TCT
[ENA]
¡û
>W1610737709
LMOI01000012
Actinomycetota
Arthrobacter sp. Leaf137 [LMOI]
514868
514943
+
Arg
TCT
[ENA]
¡û
>W1610742608
LMSF01000012
Actinomycetota
Arthrobacter sp. Soil761 [LMSF]
551018
551093
+
Arg
TCT
[ENA]
¡û
>W1610742776
LMSI01000022
Actinomycetota
Arthrobacter sp. Soil764 [LMSI]
32040
31965
-
Arg
TCT
[ENA]
¡û
>W1610767791
LNQM01000002
Actinomycetota
Pseudarthrobacter enclensis [LNQM]
717148
717223
+
Arg
TCT
[ENA]
¡û
>W1610851187
LQBM01000004
Actinomycetota
Nesterenkonia jeotgali [LQBM]
320979
321052
+
Arg
TCT
[ENA]
¡û
>W1710501104
FMAZ01000002
Actinomycetota
Pseudarthrobacter enclensis [FMAZ]
717148
717223
+
Arg
TCT
[ENA]
¡û
>W1710527682
FNLE01000003
Actinomycetota
Pseudarthrobacter chlorophenolicus [FNLE]
2741498
2741423
-
Arg
TCT
[ENA]
¡û
>W1710550106
FOEZ01000019
Actinomycetota
Arthrobacter sp. OV608 [FOEZ]
31805
31730
-
Arg
TCT
[ENA]
¡û
>W1710605015
FVZL01000002
Actinomycetota
Arthrobacter sp. P2b [FVZL]
552409
552484
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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