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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.277748 (48 seq.)
>W1710988592
LPVJ01000005
Bacillota
Ferroacidibacillus organovorans ferrooxidans [LPVJ]
7220
7145
-
Ala
TGC
[ENA]
¡û
>W1711082828
LSUQ01000034
Bacillota
Ferroacidibacillus organovorans ferrooxidans [LSUQ]
19582
19657
+
Ala
TGC
[ENA]
¡û
>W1711148410
LVKL01000095
Bacillota
Ferroacidibacillus organovorans ferrooxidans [LVKL]
6446
6371
-
Ala
TGC
[ENA]
¡û
>W1711795468
MWPS01000008
Bacillota
Ferroacidibacillus organovorans ferrooxidans [MWPS]
25989
25914
-
Ala
TGC
[ENA]
¡û
>WENV180742969
ODHH01053564
[ODHH] human metagenome; G_DNA_Stool
110
35
-
Ala
TGC
[ENA]
¡û
>WENV181164470
OEIR01183170
[OEIR] soil metagenome; soil
54
129
+
Ala
TGC
[ENA]
¡û
>WENV181747975
OGQO01000360
[OGQO] human gut metagenome; faeces
3170
3095
-
Ala
TGC
[ENA]
¡û
>WENV181800490
OGRY01036679
[OGRY] human gut metagenome; faeces
842
917
+
Ala
TGC
[ENA]
¡û
>WENV182143913
OHKV01055220
[OHKV] human gut metagenome; feces
188
263
+
Ala
TGC
[ENA]
¡û
>WENV182150585
OHLI01006477
[OHLI] human gut metagenome; feces
436
361
-
Ala
TGC
[ENA]
¡û
>WENV182220732
OHQS01005094
[OHQS] human gut metagenome; feces
624
699
+
Ala
TGC
[ENA]
¡û
>WENV182392729
OIEH01000092
[OIEH] human gut metagenome; human gut
5068
5143
+
Ala
TGC
[ENA]
¡û
>WENV182639803
OJLA01129602
[OJLA] metagenome; faeces
149
224
+
Ala
TGC
[ENA]
¡û
>WENV183040531
OLGD01000042
[OLGD] human gut metagenome; faeces
140097
140172
+
Ala
TGC
[ENA]
¡û
>WENV183434543
OMBZ01008121
[OMBZ] human gut metagenome; feces
2226
2151
-
Ala
TGC
[ENA]
¡û
>WENV183474228
OMET01007962
[OMET] human gut metagenome; feces
260
335
+
Ala
TGC
[ENA]
¡û
>WENV183653656
OQWA01000040
[OQWA] human gut metagenome; human gut
25186
25261
+
Ala
TGC
[ENA]
¡û
>WENV183686804
ORMF011053188
[ORMF] groundwater metagenome; groundwater
165
92
-
Ala
TGC
[ENA]
¡û
>WENV170043920
CDYU01052808
[CDYU] gut metagenome; human stools
44422
44497
+
Ala
TGC
[ENA]
¡û
>WENV170573962
FLYL01053910
[FLYL] hot springs metagenome; Sediment
416
491
+
Ala
TGC
[ENA]
¡û
>C181070369
CP022657
Bacillota
Tumebacillus algifaecis THMBR28 [CP022657]
2929300
2929225
-
Ala
TGC
-
¡û
>W1910020576
BDUF01000070
Bacillota
Effusibacillus lacus skLN1 [BDUF]
138
63
-
Ala
TGC
[ENA]
¡û
>W1910020581
BDUF01000075
Bacillota
Effusibacillus lacus skLN1 [BDUF]
15820
15745
-
Ala
TGC
[ENA]
¡û
>W1910020606
BDUF01000101
Bacillota
Effusibacillus lacus skLN1 [BDUF]
2664
2589
-
Ala
TGC
[ENA]
¡û
>W1910777278
MPDK01000004
Bacillota
Acidibacillus sulfuroxidans Y002 [MPDK]
110799
110874
+
Ala
TGC
[ENA]
¡û
>W1910777313
MPDK01000074
Bacillota
Acidibacillus sulfuroxidans Y002 [MPDK]
1816
1741
-
Ala
TGC
[ENA]
¡û
>W2010078568
BDUF01000070
Bacillota
Effusibacillus lacus skLN1 [BDUF]
138
63
-
Ala
TGC
[ENA]
¡û
>W2010078573
BDUF01000075
Bacillota
Effusibacillus lacus skLN1 [BDUF]
15820
15745
-
Ala
TGC
[ENA]
¡û
>W2010078598
BDUF01000101
Bacillota
Effusibacillus lacus skLN1 [BDUF]
2664
2589
-
Ala
TGC
[ENA]
¡û
>W2010891974
MPDK01000004
Bacillota
Acidibacillus sulfuroxidans Y002 [MPDK]
110799
110874
+
Ala
TGC
[ENA]
¡û
>W2010892009
MPDK01000074
Bacillota
Acidibacillus sulfuroxidans Y002 [MPDK]
1816
1741
-
Ala
TGC
[ENA]
¡û
>W2011626737
SLZX01000033
Bacillota
Effusibacillus lacus DSM 27172 [SLZX]
2678
2603
-
Ala
TGC
[ENA]
¡û
>W2011626759
SLZX01000046
Bacillota
Effusibacillus lacus DSM 27172 [SLZX]
15821
15746
-
Ala
TGC
[ENA]
¡û
>C231003856
AP023366
Bacillota
Effusibacillus dendaii skT53 [AP023366]
2020098
2020023
-
Ala
TGC
-
¡û
>C231003875
AP023366
Bacillota
Effusibacillus dendaii skT53 [AP023366]
1359324
1359249
-
Ala
TGC
-
¡û
>C231003880
AP023366
Bacillota
Effusibacillus dendaii skT53 [AP023366]
1135491
1135416
-
Ala
TGC
-
¡û
>C231003901
AP023366
Bacillota
Effusibacillus dendaii skT53 [AP023366]
1126297
1126222
-
Ala
TGC
-
¡û
>C231070173
CP054394
Bacillota
Natranaerofaba carboxydovora ANCO1 [CP054394]
1990
2065
+
Ala
TGC
-
¡û
>C231070216
CP054394
Bacillota
Natranaerofaba carboxydovora ANCO1 [CP054394]
1680301
1680226
-
Ala
TGC
-
¡û
>W2310011780
BOQE01000001
Bacillota
Collibacillus ludicampi TP075 [BOQE]
1802809
1802884
+
Ala
TGC
[ENA]
¡û
>W2310011789
BOQE01000001
Bacillota
Collibacillus ludicampi TP075 [BOQE]
1816846
1816921
+
Ala
TGC
[ENA]
¡û
>W2310011817
BOQE01000001
Bacillota
Collibacillus ludicampi TP075 [BOQE]
2182488
2182563
+
Ala
TGC
[ENA]
¡û
>W2310011873
BOQE01000001
Bacillota
Collibacillus ludicampi TP075 [BOQE]
3810594
3810519
-
Ala
TGC
[ENA]
¡û
>W2310011883
BOQE01000001
Bacillota
Collibacillus ludicampi TP075 [BOQE]
404991
404916
-
Ala
TGC
[ENA]
¡û
>W2310011888
BOQE01000001
Bacillota
Collibacillus ludicampi TP075 [BOQE]
399411
399336
-
Ala
TGC
[ENA]
¡û
>W1610843468
LPVJ01000005
Bacillota
Ferroacidibacillus organovorans ferrooxidans [LPVJ]
7220
7145
-
Ala
TGC
[ENA]
¡û
>W1610921581
LSUQ01000034
Bacillota
Ferroacidibacillus organovorans ferrooxidans [LSUQ]
19582
19657
+
Ala
TGC
[ENA]
¡û
>W1610959141
LVKL01000095
Bacillota
Ferroacidibacillus organovorans ferrooxidans [LVKL]
6446
6371
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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