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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.277759 (58 seq.)
>W131165608
ARBS01000004
Actinomycetota
Longispora albida DSM 44784 [ARBS]
361443
361368
-
Gly
GCC
[ENA]
¡û
>W131165638
ARBS01000016
Actinomycetota
Longispora albida DSM 44784 [ARBS]
134860
134785
-
Gly
GCC
[ENA]
¡û
>W1711492369
MKKI01000013
Actinomycetota
Corynebacterium sp. CNJ-954 [MKKI]
32881
32808
-
Gly
GCC
[ENA]
¡û
>W1711492372
MKKI01000013
Actinomycetota
Corynebacterium sp. CNJ-954 [MKKI]
32540
32465
-
Gly
GCC
[ENA]
¡û
>W1711501569
MKRT01000028
Actinomycetota
Microbacterium sp. 69-10 [MKRT]
11254
11179
-
Gly
GCC
[ENA]
¡û
>W131225810
AUDX01000004
Actinomycetota
Gulosibacter molinativorax DSM 13485 [AUDX]
336
261
-
Gly
GCC
[ENA]
¡û
>W141000312
ACQP01000130
Actinomycetota
Kutzneria sp. 744 [ACQP]
31321
31248
-
Gly
GCC
[ENA]
¡û
>W141000342
ACQP01000254
Actinomycetota
Kutzneria sp. 744 [ACQP]
16464
16537
+
Gly
GCC
[ENA]
¡û
>w004006
AAEF02000073
Actinomycetota
Kineococcus radiotolerans SRS30216 [AAEF]
20
95
+
Gly
GCC
[ENA]
¡û
>w003981
AAEF02000011
Actinomycetota
Kineococcus radiotolerans SRS30216 [AAEF]
31017
30942
-
Gly
GCC
[ENA]
¡û
>W141170804
AXYY01000100
Actinomycetota
Candidatus Ancillula trichonymphae trichonymphae ImTpAt1 [AXYY]
3474
3549
+
Gly
GCC
[ENA]
¡û
>C08005709
CP000750
Actinomycetota
Kineococcus radiotolerans SRS30216 = ATCC BAA-149 [CP000750]
3933336
3933263
-
Gly
GCC
[Ensembl]
¡û
>C08005722
CP000750
Actinomycetota
Kineococcus radiotolerans SRS30216 = ATCC BAA-149 [CP000750]
2359458
2359385
-
Gly
GCC
[Ensembl]
¡û
>WENV183729425
PJTQ01038241
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
425
498
+
Gly
GCC
[ENA]
¢þ
>C181109995
CP024988
Actinomycetota
Corynebacterium provencense 17KM38 [CP024988]
1468010
1468083
+
Gly
GCC
-
¡û
>C181109998
CP024988
Actinomycetota
Corynebacterium provencense 17KM38 [CP024988]
1468353
1468428
+
Gly
GCC
-
¡û
>C181110000
CP024988
Actinomycetota
Corynebacterium provencense 17KM38 [CP024988]
1468593
1468668
+
Gly
GCC
-
¡û
>C191114551
CP033896
Actinomycetota
Corynebacterium choanae 200CH [CP033896]
1667579
1667652
+
Gly
GCC
-
¡û
>C191114554
CP033896
Actinomycetota
Corynebacterium choanae 200CH [CP033896]
1667865
1667940
+
Gly
GCC
-
¡û
>C191114556
CP033896
Actinomycetota
Corynebacterium choanae 200CH [CP033896]
1668096
1668169
+
Gly
GCC
-
¡û
>W141757970
JNYH01000217
Actinomycetota
Kutzneria albida [JNYH]
5352
5279
-
Gly
GCC
[ENA]
¡û
>W141757976
JNYH01000264
Actinomycetota
Kutzneria albida [JNYH]
9886
9813
-
Gly
GCC
[ENA]
¡û
>W1810368129
PVZF01000013
Actinomycetota
Kineococcus rhizosphaerae DSM 19711 [PVZF]
112742
112669
-
Gly
GCC
[ENA]
¡û
>W1810387060
PXVE01000017
Actinomycetota
Gulosibacter molinativorax ON4 [PXVE]
66048
66121
+
Gly
GCC
[ENA]
¡û
>W1810387087
PXVE01000122
Actinomycetota
Gulosibacter molinativorax ON4 [PXVE]
542
469
-
Gly
GCC
[ENA]
¡û
>W1810743450
QORO01000001
Actinomycetota
Microbacterium sorbitolivorans C1.15228 [QORO]
762176
762103
-
Gly
GCC
[ENA]
¡û
>W1810743453
QORO01000001
Actinomycetota
Microbacterium sorbitolivorans C1.15228 [QORO]
761860
761787
-
Gly
GCC
[ENA]
¡û
>W1810743479
QORO01000006
Actinomycetota
Microbacterium sorbitolivorans C1.15228 [QORO]
7787
7862
+
Gly
GCC
[ENA]
¡û
>W1810885768
QUNO01000004
Actinomycetota
Kutzneria buriramensis DSM 45791 [QUNO]
223904
223831
-
Gly
GCC
[ENA]
¡û
>W1810885797
QUNO01000035
Actinomycetota
Kutzneria buriramensis DSM 45791 [QUNO]
62831
62904
+
Gly
GCC
[ENA]
¡û
>C151017644
CP007155
Actinomycetota
Kutzneria albida DSM 43870 [CP007155]
2521706
2521633
-
Gly
GCC
[Ensembl]
¡û
>C151017656
CP007155
Actinomycetota
Kutzneria albida DSM 43870 [CP007155]
91595
91522
-
Gly
GCC
[Ensembl]
¡û
>W1510063981
CDAR01000010
Actinomycetota
Microbacterium gorillae G3 [CDAR]
334134
334209
+
Gly
GCC
[ENA]
¡û
>W1510063984
CDAR01000010
Actinomycetota
Microbacterium gorillae G3 [CDAR]
344067
344142
+
Gly
GCC
[ENA]
¡û
>W10124069
AEAU01000070
Actinomycetota
Corynebacterium variabile DSM 44702 [AEAU]
85790
85863
+
Gly
GCC
[ENA]
¡û
>C11106688
CP002917
Actinomycetota
Corynebacterium variabile DSM 44702 [CP002917]
1790326
1790253
-
Gly
GCC
[Ensembl]
¡û
>C11106691
CP002917
Actinomycetota
Corynebacterium variabile DSM 44702 [CP002917]
1789993
1789918
-
Gly
GCC
[Ensembl]
¡û
>C11106693
CP002917
Actinomycetota
Corynebacterium variabile DSM 44702 [CP002917]
1789757
1789684
-
Gly
GCC
[Ensembl]
¡û
>W11130906
AEAU01000070
Actinomycetota
Corynebacterium variabile DSM 44702 [AEAU]
85790
85863
+
Gly
GCC
[ENA]
¡û
>W11164136
AFIZ01000003
Actinomycetota
Corynebacterium nuruki S6-4 [AFIZ]
56849
56776
-
Gly
GCC
[ENA]
¡û
>W11164139
AFIZ01000003
Actinomycetota
Corynebacterium nuruki S6-4 [AFIZ]
56517
56442
-
Gly
GCC
[ENA]
¡û
>W11164141
AFIZ01000003
Actinomycetota
Corynebacterium nuruki S6-4 [AFIZ]
56292
56219
-
Gly
GCC
[ENA]
¡û
>W1610163620
FAUH01000004
Actinomycetota
Corynebacterium variabile [FAUH]
149558
149631
+
Gly
GCC
[ENA]
¡û
>W1610163623
FAUH01000004
Actinomycetota
Corynebacterium variabile [FAUH]
149891
149966
+
Gly
GCC
[ENA]
¡û
>W1610163625
FAUH01000004
Actinomycetota
Corynebacterium variabile [FAUH]
150127
150200
+
Gly
GCC
[ENA]
¡û
>W1610419391
FIZC01000001
Actinomycetota
Corynebacterium provencense SN15 [FIZC]
1870
1797
-
Gly
GCC
[ENA]
¡û
>W1610419394
FIZC01000001
Actinomycetota
Corynebacterium provencense SN15 [FIZC]
1527
1452
-
Gly
GCC
[ENA]
¡û
>W1610419396
FIZC01000001
Actinomycetota
Corynebacterium provencense SN15 [FIZC]
1287
1212
-
Gly
GCC
[ENA]
¡û
>C131005352
CP003696
Actinomycetota
Corynebacterium terpenotabidum Y-11 [CP003696]
1446744
1446671
-
Gly
GCC
[Ensembl]
¡û
>C131005355
CP003696
Actinomycetota
Corynebacterium terpenotabidum Y-11 [CP003696]
1446413
1446338
-
Gly
GCC
[Ensembl]
¡û
>C131005357
CP003696
Actinomycetota
Corynebacterium terpenotabidum Y-11 [CP003696]
1446188
1446113
-
Gly
GCC
[Ensembl]
¡û
>W1710165287
FAUH01000004
Actinomycetota
Corynebacterium variabile [FAUH]
149558
149631
+
Gly
GCC
[ENA]
¡û
>W1710165290
FAUH01000004
Actinomycetota
Corynebacterium variabile [FAUH]
149891
149966
+
Gly
GCC
[ENA]
¡û
>W1710165292
FAUH01000004
Actinomycetota
Corynebacterium variabile [FAUH]
150127
150200
+
Gly
GCC
[ENA]
¡û
>W1710419127
FIZC01000001
Actinomycetota
Corynebacterium provencense SN15 [FIZC]
1870
1797
-
Gly
GCC
[ENA]
¡û
>W1710419130
FIZC01000001
Actinomycetota
Corynebacterium provencense SN15 [FIZC]
1527
1452
-
Gly
GCC
[ENA]
¡û
>W1710419132
FIZC01000001
Actinomycetota
Corynebacterium provencense SN15 [FIZC]
1287
1212
-
Gly
GCC
[ENA]
¡û
>W1710513212
FMZZ01000004
Actinomycetota
Actinokineospora iranica iranicum [FMZZ]
222389
222464
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK