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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.277761 (65 seq.)
>W1710806127
LKAQ01000004
Thermodesulfobacteriota
Pseudodesulfovibrio hydrargyri dechloracetivorans [LKAQ]
2459589
2459665
+
Gly
TCC
[ENA]
¡û
>W1711300266
MAGO01000007
Thermodesulfobacteriota
Dissulfuribacter thermophilus [MAGO]
36627
36703
+
Gly
TCC
[ENA]
¡û
>W1711411769
MGTN01000074
Thermodesulfobacteriota
Desulfovibrionales bacterium GWA2_65_9 [MGTN]
15950
16026
+
Gly
TCC
[ENA]
¡û
>W1711581835
MNUQ01000025
Thermodesulfobacteriota
Desulfovibrionaceae bacterium CG1_02_65_16 [MNUQ]
3619
3543
-
Gly
TCC
[ENA]
¡û
>W131099222
AOSV01000030
Thermodesulfobacteriota
Desulfocurvibacter africanus PCS [AOSV]
392
316
-
Gly
TCC
[ENA]
¡û
>W131208377
ATHI01000012
Thermodesulfobacteriota
Alkalidesulfovibrio alkalitolerans DSM 16529 [ATHI]
24402
24478
+
Gly
TCC
[ENA]
¡û
>W131208484
ATHV01000055
Thermodesulfobacteriota
Desulfovibrio sp. X2 [ATHV]
107428
107504
+
Gly
TCC
[ENA]
¡û
>W131215449
ATVA01000011
Thermodesulfobacteriota
Paucidesulfovibrio longus DSM 6739 [ATVA]
295927
296003
+
Gly
TCC
[ENA]
¡û
>W131222837
AUBP01000003
Thermodesulfobacteriota
Desulfovibrio inopinatus DSM 10711 [AUBP]
176126
176202
+
Gly
TCC
[ENA]
¡û
>W131222921
AUBQ01000016
Thermodesulfobacteriota
Fundidesulfovibrio putealis DSM 16056 [AUBQ]
197090
197166
+
Gly
TCC
[ENA]
¡û
>W131224592
AUCX01000018
Thermodesulfobacteriota
Maridesulfovibrio bastinii DSM 16055 [AUCX]
54159
54235
+
Gly
TCC
[ENA]
¡û
>W131236070
AULZ01000021
Thermodesulfobacteriota
Desulfocurvibacter africanus DSM 2603 [AULZ]
76395
76471
+
Gly
TCC
[ENA]
¡û
>W131236101
AUMA01000007
Thermodesulfobacteriota
Desulfovibrio aminophilus DSM 12254 [AUMA]
264727
264803
+
Gly
TCC
[ENA]
¡û
>WENV180276902
OBHV01005492
[OBHV] metagenome; water
541
617
+
Gly
TCC
[ENA]
¢þ
>WENV180297140
OBJA01011756
[OBJA] soil metagenome; sediment, water from around vicinity
1465
1389
-
Gly
TCC
[ENA]
¢þ
>WENV180317121
OBKJ01024406
[OBKJ] metagenome; hydrothermal vent
237
313
+
Gly
TCC
[ENA]
¢þ
>WENV180332395
OBLD01002543
[OBLD] metagenome; water
1168
1244
+
Gly
TCC
[ENA]
¢þ
>WENV180345513
OBLN01000473
[OBLN] sediment metagenome; sediment
6020
5946
-
Gly
TCC
[ENA]
¢þ
>WENV180581588
OCMK01009659
[OCMK] metagenome; diffuse fluid
151
75
-
Gly
TCC
[ENA]
¢þ
>WENV180582120
OCMO01001355
[OCMO] metagenome; diffuse fluid
941
1017
+
Gly
TCC
[ENA]
¢þ
>WENV180584914
OCOJ01680481
[OCOJ] soil metagenome; soil
78
154
+
Gly
TCC
[ENA]
¢þ
>W141092637
AVAG01000027
Thermodesulfobacteriota
Desulfonauticus sp. A7A [AVAG]
264
188
-
Gly
TCC
[ENA]
¡û
>WENV181206630
OFAW01000685
[OFAW] metagenome; hydrothermal vent
4033
4109
+
Gly
TCC
[ENA]
¢þ
>WENV181207188
OFAY01003058
[OFAY] metagenome; hydrothermal vent
292
216
-
Gly
TCC
[ENA]
¢þ
>WENV181207559
OFAZ01003057
[OFAZ] metagenome; hydrothermal vent
1277
1353
+
Gly
TCC
[ENA]
¢þ
>WENV181208311
OFBB01003330
[OFBB] metagenome; hydrothermal vent
1277
1353
+
Gly
TCC
[ENA]
¢þ
>WENV181208607
OFBC01000253
[OFBC] metagenome; hydrothermal vent
292
216
-
Gly
TCC
[ENA]
¢þ
>WENV181224455
OFDF01001444
[OFDF] metagenome; hydrothermal vent
1312
1236
-
Gly
TCC
[ENA]
¢þ
>WENV181224757
OFDG01003436
[OFDG] metagenome; hydrothermal vent
1278
1354
+
Gly
TCC
[ENA]
¢þ
>WENV181225589
OFDI01010758
[OFDI] metagenome; hydrothermal vent
494
570
+
Gly
TCC
[ENA]
¢þ
>W141277881
JAEX01000014
Thermodesulfobacteriota
Desulfocurvus vexinensis DSM 17965 [JAEX]
1437
1361
-
Gly
TCC
[ENA]
¡û
>WENV183512293
OMKS01000224
[OMKS] sediment metagenome; hot spring sediment
44702
44628
-
Gly
TCC
[ENA]
¢þ
>WENV183712027
PDWI01086365
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2191
2267
+
Gly
TCC
[ENA]
¢þ
>WENV183712088
PDWI01088501
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2102
2026
-
Gly
TCC
[ENA]
¢þ
>WENV183719698
PDWJ01018786
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2659
2735
+
Gly
TCC
[ENA]
¢þ
>WENV183721454
PDWJ01070460
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1596
1520
-
Gly
TCC
[ENA]
¢þ
>WENV183721460
PDWJ01070782
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
12
88
+
Gly
TCC
[ENA]
¢þ
>WENV170656895
JTFO01056747
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
180
104
-
Gly
TCC
[ENA]
¢þ
>WENV170675952
LDZQ01001469
[LDZQ] terrestrial metagenome; oil reservoir sample I2
22478
22554
+
Gly
TCC
[ENA]
¢þ
>WENV170715180
LNQE01000233
[LNQE] hydrocarbon metagenome; hydrocarbon-contaminated ditch
8380
8456
+
Gly
TCC
[ENA]
¢þ
>WENV170779308
LZQN01000312
[LZQN] oil field metagenome; sample BH-FW-7 from oil reservoir
332
256
-
Gly
TCC
[ENA]
¢þ
>C191000230
AP017378
Thermodesulfobacteriota
Desulfovibrio ferrophilus IS5 [AP017378]
414340
414416
+
Gly
TCC
-
¡û
>W09108756
ABTO01000014
Thermodesulfobacteriota
Desulfohalobium retbaense DSM 5692 [ABTO]
60769
60845
+
Gly
TCC
[ENA]
¡û
>W09126274
ACJN01000003
Thermodesulfobacteriota
Desulfonatronospira thiodismutans ASO3-1 [ACJN]
189778
189702
-
Gly
TCC
[ENA]
¡û
>W141701585
JMKT01000011
Thermodesulfobacteriota
Desulfonatronovibrio hydrogenovorans DSM 9292 [JMKT]
240499
240575
+
Gly
TCC
[ENA]
¡û
>W141776878
JOMJ01000003
Thermodesulfobacteriota
Desulfohalovibrio reitneri L21-Syr-AB [JOMJ]
403147
403223
+
Gly
TCC
[ENA]
¡û
>W1910547818
FZOC01000001
Thermodesulfobacteriota
Humidesulfovibrio mexicanus DSM 13116 [FZOC]
500041
499965
-
Gly
TCC
[ENA]
¡û
>W10111364
ADDI01000004
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
34141
34065
-
Gly
TCC
[ENA]
¡û
>C10105406
CP001734
Thermodesulfobacteriota
Desulfohalobium retbaense DSM 5692 [CP001734]
2370799
2370723
-
Gly
TCC
[Ensembl]
¡û
>C11106866
CP002431
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [CP002431]
2476263
2476187
-
Gly
TCC
[Ensembl]
¡û
>W11114307
ADDI01000004
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
34141
34065
-
Gly
TCC
[ENA]
¡û
>W1511534100
JYNP01000013
Thermodesulfobacteriota
Desulfonatronovibrio magnus AHT22 [JYNP]
1693
1617
-
Gly
TCC
[ENA]
¡û
>W11149146
AEUJ01000007
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [AEUJ]
133467
133543
+
Gly
TCC
[ENA]
¡û
>W11162680
AFHE01000001
Thermodesulfobacteriota
Desulfocurvibacter africanus str. Walvis Bay [AFHE]
251809
251733
-
Gly
TCC
[ENA]
¡û
>C121008993
CP003220
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [CP003220]
3781611
3781687
+
Gly
TCC
[Ensembl]
¡û
>C121009070
CP003221
Thermodesulfobacteriota
Desulfocurvibacter africanus subsp. africanus str. Walvis Bay [CP003221]
251809
251733
-
Gly
TCC
[Ensembl]
¡û
>C161068267
CP014206
Thermodesulfobacteriota
Pseudodesulfovibrio indicus J2 [CP014206]
3236085
3236009
-
Gly
TCC
[Ensembl]
¡û
>W1610082325
BDFE01000004
Thermodesulfobacteriota
Desulfoplanes formicivorans [BDFE]
192508
192432
-
Gly
TCC
[ENA]
¡û
>W1610612377
LGER01000035
Thermodesulfobacteriota
Desulfonauticus sp. 38_4375 [LGER]
22478
22554
+
Gly
TCC
[ENA]
¡û
>W1611052550
MAGO01000007
Thermodesulfobacteriota
Dissulfuribacter thermophilus [MAGO]
36627
36703
+
Gly
TCC
[ENA]
¡û
>W1710081325
BDFE01000004
Thermodesulfobacteriota
Desulfoplanes formicivorans [BDFE]
192508
192432
-
Gly
TCC
[ENA]
¡û
>W1710524211
FNIN01000021
Thermodesulfobacteriota
Desulfonauticus submarinus [FNIN]
618
542
-
Gly
TCC
[ENA]
¡û
>W1710602204
FUYA01000007
Thermodesulfobacteriota
Desulfobaculum bizertense DSM 18034 [FUYA]
42770
42846
+
Gly
TCC
[ENA]
¡û
>W1710602286
FUYC01000002
Thermodesulfobacteriota
Paucidesulfovibrio gracilis DSM 16080 [FUYC]
304598
304674
+
Gly
TCC
[ENA]
¡û
>W1710733843
LGER01000035
Thermodesulfobacteriota
Desulfonauticus sp. 38_4375 [LGER]
22478
22554
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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