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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.277787 (68 seq.)
>W131177608
ARKW01000150
Bacillota
Paenibacillus ginsengihumi DSM 21568 [ARKW]
176881
176809
-
Val
GAC
[ENA]
¡û
>WENV170706051
LNAP01001002
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
13427
13355
-
Val
GAC
[ENA]
¡û
>WENV170708082
LNAP01048845
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1583
1511
-
Val
GAC
[ENA]
¡û
>W141462599
JFHX01000178
Bacillota
Paenibacillus ehimensis A2 [JFHX]
47772
47848
+
Val
GAC
[ENA]
¡û
>W141754308
JNVM01000004
Bacillota
Paenibacillus tyrfis MSt1 [JNVM]
442839
442765
-
Val
GAC
[ENA]
¡û
>W141754309
JNVM01000004
Bacillota
Paenibacillus tyrfis MSt1 [JNVM]
440262
440188
-
Val
GAC
[ENA]
¡û
>W1910154807
BIMB01000006
Bacillota
Paenibacillus elgii NBRC 100335 [BIMB]
152598
152524
-
Val
GAC
[ENA]
¡û
>W1910155084
BIMH01000011
Bacillota
Paenibacillus validus NBRC 15382 [BIMH]
78698
78624
-
Val
GAC
[ENA]
¡û
>W1910175779
BJCS01000028
Bacillota
Paenibacillus naphthalenovorans 4B1 [BJCS]
6372
6446
+
Val
GAC
[ENA]
¡û
>W1910505716
FYEP01000014
Bacillota
Paenibacillus elgii B69 [FYEP]
154413
154339
-
Val
GAC
[ENA]
¡û
>W1910505717
FYEP01000014
Bacillota
Paenibacillus elgii B69 [FYEP]
152119
152045
-
Val
GAC
[ENA]
¡û
>W1910832017
MYFO01000038
Bacillota
Paenibacillus sp. MEC069 [MYFO]
8558
8630
+
Val
GAC
[ENA]
¡û
>W1910832018
MYFO01000038
Bacillota
Paenibacillus sp. MEC069 [MYFO]
22009
22083
+
Val
GAC
[ENA]
¡û
>W1910913832
NHRJ02000001
Bacillota
Bacillus xerothermodurans ATCC 27380 [NHRJ]
458716
458790
+
Val
GAC
[ENA]
¡û
>W1810402791
PYHP01000032
Bacillota
Paenibacillus elgii AC13 [PYHP]
45639
45713
+
Val
GAC
[ENA]
¡û
>W2010087572
BILX01000033
Bacillota
Paenibacillus ehimensis NBRC 15659 [BILX]
25329
25254
-
Val
GAC
[ENA]
¡û
>W2010087742
BIMB01000006
Bacillota
Paenibacillus elgii NBRC 100335 [BIMB]
152598
152524
-
Val
GAC
[ENA]
¡û
>W2010088019
BIMH01000011
Bacillota
Paenibacillus validus NBRC 15382 [BIMH]
78698
78624
-
Val
GAC
[ENA]
¡û
>W2010089156
BJCS01000028
Bacillota
Paenibacillus naphthalenovorans 4B1 [BJCS]
6372
6446
+
Val
GAC
[ENA]
¡û
>W2010425405
FYEP01000014
Bacillota
Paenibacillus elgii B69 [FYEP]
154413
154339
-
Val
GAC
[ENA]
¡û
>W2010425406
FYEP01000014
Bacillota
Paenibacillus elgii B69 [FYEP]
152119
152045
-
Val
GAC
[ENA]
¡û
>W2010471247
JAAGWC010000049
Bacillota
Paenibacillus elgii LMG 24465 [JAAGWC]
44789
44863
+
Val
GAC
[ENA]
¡û
>W2010488643
JAAIVH010000001
Bacillota
Paenibacillus elgii SWL-W8 [JAAIVH]
5721227
5721301
+
Val
GAC
[ENA]
¡û
>W2010922137
MYFO01000038
Bacillota
Paenibacillus sp. MEC069 [MYFO]
8558
8630
+
Val
GAC
[ENA]
¡û
>W2010922138
MYFO01000038
Bacillota
Paenibacillus sp. MEC069 [MYFO]
22009
22083
+
Val
GAC
[ENA]
¡û
>W2010966853
NHRJ02000001
Bacillota
Bacillus xerothermodurans ATCC 27380 [NHRJ]
458716
458790
+
Val
GAC
[ENA]
¡û
>W2011496269
RXHU01000070
Bacillota
Paenibacillus whitsoniae MER 54 [RXHU]
20116
20044
-
Val
GAC
[ENA]
¡û
>W2011577106
SGWF01000013
Bacillota
Paenibacillus sp. JMULE4 [SGWF]
218074
218000
-
Val
GAC
[ENA]
¡û
>W2011599683
SIRE01000010
Bacillota
Paenibacillus sp. N2SHLJ1 [SIRE]
147766
147838
+
Val
GAC
[ENA]
¡û
>W2011599684
SIRE01000010
Bacillota
Paenibacillus sp. N2SHLJ1 [SIRE]
151233
151305
+
Val
GAC
[ENA]
¡û
>W2011639536
SMRT01000007
Bacillota
Paenibacillus sp. MS74 [SMRT]
69613
69687
+
Val
GAC
[ENA]
¡û
>W2012037397
VIDW01000001
Bacillota
Paenibacillus sp. tmac-D7 [VIDW]
134635
134709
+
Val
GAC
[ENA]
¡û
>W2012098108
VNJI01000049
Bacillota
Paenibacillus sp. JC52 [VNJI]
5317
5243
-
Val
GAC
[ENA]
¡û
>W2012402127
WNZX01000021
Bacillota
Paenibacillus validus 2CS3 [WNZX]
7280
7206
-
Val
GAC
[ENA]
¡û
>W2012450080
WUWM01000031
Bacillota
Paenibacillus sp. SJY2 [WUWM]
59682
59607
-
Val
GAC
[ENA]
¡û
>W2110011870
BCPS01000066
Bacillota
Paenibacillus sp. EPM92 [BCPS]
78052
77978
-
Val
GAC
[ENA]
¡û
>W2110068587
BOVK01000026
Bacillota
Xylanibacillus composti K13 [BOVK]
47824
47752
-
Val
GAC
[ENA]
¡û
>W2110130666
CAJVAS010000002
Bacillota
Paenibacillus solanacearum [CAJVAS]
289900
289974
+
Val
GAC
[ENA]
¡û
>W2110275712
JACVVD010000001
Bacillota
Paenibacillus sp. WST5 [JACVVD]
981754
981682
-
Val
GAC
[ENA]
¡û
>W2110430886
JAEMXM010000013
Bacillota
Paenibacillus sp. YIM B00362 YIM B00362 [JAEMXM]
153501
153573
+
Val
GAC
[ENA]
¡û
>W2110499461
JAFIBN010000001
Bacillota
Paenibacillus sp. PvP091 [JAFIBN]
2970172
2970098
-
Val
GAC
[ENA]
¡û
>W2110499788
JAFIBU010000001
Bacillota
Paenibacillus sp. PvR098 [JAFIBU]
333979
334053
+
Val
GAC
[ENA]
¡û
>W2110539411
JAGGLB010000015
Bacillota
Paenibacillus eucommiae DSM 26048 [JAGGLB]
27378
27306
-
Val
GAC
[ENA]
¡û
>W2110554500
JAGIOW010000001
Bacillota
Paenibacillus sp. PvP052 [JAGIOW]
1606485
1606559
+
Val
GAC
[ENA]
¡û
>W2110626944
JAHNZO010000025
Bacillota
Paenibacillus sp. SM 69 [JAHNZO]
72753
72679
-
Val
GAC
[ENA]
¡û
>C231044114
CP035456
Bacillota
Paenibacillus mucilaginosus KN-18 [CP035456]
6427742
6427817
+
Val
GAC
-
¡û
>C231287895
CP090978
Bacillota
Paenibacillus sp. YPD9-1 [CP090978]
2020782
2020854
+
Val
GAC
-
¡û
>C231638368
CP121215
Bacillota
Paenibacillus elgii L146 [CP121215]
4917872
4917946
+
Val
GAC
-
¡û
>W2310020990
BSDJ01000036
Bacillota
Paenibacillus tyrfis YSS-72.2.G2 [BSDJ]
43126
43200
+
Val
GAC
[ENA]
¡û
>W2310020991
BSDJ01000036
Bacillota
Paenibacillus tyrfis YSS-72.2.G2 [BSDJ]
46871
46945
+
Val
GAC
[ENA]
¡û
>C11117485
CP002869
Bacillota
Paenibacillus mucilaginosus KNP414 [CP002869]
4125065
4125141
+
Val
GAC
[Ensembl]
¡û
>W11163507
AFHW01000005
Bacillota
Paenibacillus elgii B69 [AFHW]
152504
152430
-
Val
GAC
[ENA]
¡û
>C121009377
CP003235
Bacillota
Paenibacillus mucilaginosus 3016 [CP003235]
6384401
6384477
+
Val
GAC
[Ensembl]
¡û
>C121013038
CP003422
Bacillota
Paenibacillus mucilaginosus K02 [CP003422]
6507538
6507614
+
Val
GAC
[Ensembl]
¡û
>C161058222
CP013652
Bacillota
Paenibacillus naphthalenovorans 32O-Y [CP013652]
1098539
1098613
+
Val
GAC
[Ensembl]
¡û
>W1610048256
BBEA01000001
Bacillota
Paenibacillus sp. JCM 9795 [BBEA]
107026
106952
-
Val
GAC
[ENA]
¡û
>W1610048334
BBEB01000004
Bacillota
Paenibacillus sp. JCM 9796 [BBEB]
96728
96654
-
Val
GAC
[ENA]
¡û
>W1610048451
BBEC01000088
Bacillota
Paenibacillus sp. YK5 [BBEC]
8463
8387
-
Val
GAC
[ENA]
¡û
>W1610543171
JTHN01000020
Bacillota
Paenibacillus sp. A3 [JTHN]
8679
8605
-
Val
GAC
[ENA]
¡û
>W1610858604
LQRA01000067
Bacillota
Paenibacillus elgii [LQRA]
45943
46017
+
Val
GAC
[ENA]
¡û
>W1710044766
BBEA01000001
Bacillota
Paenibacillus sp. JCM 9795 [BBEA]
107026
106952
-
Val
GAC
[ENA]
¡û
>W1710044844
BBEB01000004
Bacillota
Paenibacillus sp. JCM 9796 [BBEB]
96728
96654
-
Val
GAC
[ENA]
¡û
>W1710044961
BBEC01000088
Bacillota
Paenibacillus sp. YK5 [BBEC]
8463
8387
-
Val
GAC
[ENA]
¡û
>W1710505505
FMTT01000005
Bacillota
Paenibacillus tianmuensis [FMTT]
33029
32955
-
Val
GAC
[ENA]
¡û
>W1710518329
FNDY01000010
Bacillota
Paenibacillus naphthalenovorans [FNDY]
141774
141698
-
Val
GAC
[ENA]
¡û
>W1710535904
FNSW01000001
Bacillota
Paenibacillus sp. GP183 [FNSW]
256461
256533
+
Val
GAC
[ENA]
¡û
>W1710579735
FPIU01000004
Bacillota
Paenibacillus sp. UNCCL117 [FPIU]
476353
476279
-
Val
GAC
[ENA]
¡û
>W1710646302
JTHN01000020
Bacillota
Paenibacillus sp. A3 [JTHN]
8679
8605
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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